PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_07042
Common NameKK1_007242
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family AP2
Protein Properties Length: 450aa    MW: 50056.4 Da    PI: 7.1094
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_07042genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.32.1e-14198257155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  +   g  ++ k+++lg ++ +e+Aa+ ++ a++k++g
  C.cajan_07042 198 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgKQVYLGGYDKEEKAARTYDLAALKYWG 257
                    57*******************666664478446*************************98 PP
2AP247.54.5e-15300351155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  C.cajan_07042 300 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 351
                    57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-11198257IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-16198267IPR016177DNA-binding domain
CDDcd000184.49E-21198267No hitNo description
Gene3DG3DSA:3.30.730.109.1E-15199266IPR001471AP2/ERF domain
SMARTSM003802.6E-26199271IPR001471AP2/ERF domain
PROSITE profilePS5103219.006199265IPR001471AP2/ERF domain
PRINTSPR003671.7E-6200211IPR001471AP2/ERF domain
PfamPF008475.5E-10300351IPR001471AP2/ERF domain
CDDcd000189.01E-25300359No hitNo description
SuperFamilySSF541711.18E-17300360IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-18301359IPR001471AP2/ERF domain
SMARTSM003805.1E-33301365IPR001471AP2/ERF domain
PROSITE profilePS5103219.098301359IPR001471AP2/ERF domain
PRINTSPR003671.7E-6341361IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MNWLDFFLYP QEQNEDHSQT ENPLIGFNTH EISATDVSSE CFDLTSFGLV ESLNRNNTHH  60
ITPIDWCTKG LGTSCSGSNE DMYNNKPQPK LENFLSEKPA TGGGGSPKST NSIGLSMIKT  120
WLKNQASQSD AANTSLSMST TVSQSGTVAL PLLTASVDGE SKQQPSTTAL YNNQSEVVNL  180
STVARKSPDT VGLGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQTRKG KQVYLGGYDK  240
EEKAARTYDL AALKYWGTAT ATNFPISHYE KELEEMKNMT RQEYVASLRR KSSGFSRGAS  300
IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLKAVTNFEM  360
NRYDVRSILE SSTLPIGGSA KRSNSFIYGG GDGNDVPMTM ATSFIANDVV NQNNGFADND  420
GKMLEYENMF NPTDPYHERN FVSSFAANIW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_07042
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020231862.10.0AP2-like ethylene-responsive transcription factor BBM
SwissprotQ6PQQ41e-133BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A151U5M20.0A0A151U5M2_CAJCA; AP2-like ethylene-responsive transcription factor BBM
STRINGGLYMA10G31440.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-130AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  5. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  6. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  7. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  8. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]