PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_06805 | ||||||||
Common Name | KK1_006997 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 525aa MW: 55921 Da PI: 8.8292 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 93 | 115 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H C.cajan_06805 93 FICEICNKGFQRDQNLQLHRRGH 115 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.1 | 0.0012 | 169 | 191 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + C.cajan_06805 169 WKCDKCSKKYAVQSDWKAHSKIC 191 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 92 | 115 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.4E-6 | 92 | 115 | No hit | No description |
SMART | SM00355 | 0.022 | 93 | 115 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 6.3E-5 | 93 | 115 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.845 | 93 | 115 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 95 | 115 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 134 | 164 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.8E-4 | 157 | 190 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.4E-6 | 164 | 189 | No hit | No description |
SMART | SM00355 | 150 | 169 | 189 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 525 aa Download sequence Send to blast |
MSNITSCDSG SFSTENTRED AAVKQQSEIL GQFHSPHSHT STTTTTNNSN GNSNTNSQPP 60 APVKKKRSLP GNPDPSAEVI ALSPTTLMAT NRFICEICNK GFQRDQNLQL HRRGHNLPWK 120 LKQRTSTEVR KRVYVCPEPS CVHHNPARAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV 180 QSDWKAHSKI CGTREYKCDC GTIFSRRDSF ITHRAFCDAL TEENNKGNEG VQLPKIGPNL 240 QCQPIPNLVS SLPINTTIPN NLSGTSEFNH SDHKHPLSLP HELMPPKPFN TNNVAMFTRT 300 LSSTSSPSLQ LSSNMFEENL AAGSPHMSAT ALLQKAAQMG ATVTEKTFAA TNMAPPSFGV 360 LQHQPNNGSH SQPFMNHYMH AGQHDVNVSP QYNNSFGASG SVGMNGVDMF NAILDQSKAL 420 SKIIEQNNRS NGGGGQNGGS SSGVNVGGSK GNGDVMTLDF LGIGGGGGGG GGGGGGGGGG 480 GGGAHGNFYG GGQQGESGSV PDHEVWRNWS SKNAGFESFS ATSSI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-34 | 165 | 223 | 3 | 61 | Zinc finger protein JACKDAW |
5b3h_F | 3e-34 | 165 | 223 | 3 | 61 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_06805 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC235335 | 1e-178 | AC235335.1 Glycine max strain Williams 82 clone GM_WBb0083K09, complete sequence. | |||
GenBank | AC235386 | 1e-178 | AC235386.1 Glycine max strain Williams 82 clone GM_WBb0115I18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_029125635.1 | 0.0 | zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
Swissprot | Q9SCQ6 | 1e-115 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A151U4T9 | 0.0 | A0A151U4T9_CAJCA; Zinc finger protein MAGPIE | ||||
STRING | XP_007144938.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2192 | 30 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-100 | C2H2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|