PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_06184 | ||||||||
Common Name | KK1_006354 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 225aa MW: 26277.5 Da PI: 7.5464 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.8 | 2.2e-19 | 56 | 110 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k+ ++t+eql+ Le+ F+k+ +++ +++ +L+k+lgL+ rq+ vWFqNrRa++k+ C.cajan_06184 56 KKKRLTSEQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKN 110 56779************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 118.1 | 4.9e-38 | 55 | 146 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl++eq+ +LE+sF++e kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++d +++e+++Le+ev +L++ ++ C.cajan_06184 55 EKKKRLTSEQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKEEFDVISKEKQKLEEEVMKLKAMVR 146 69**************************************************************************************8876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.46E-19 | 46 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.216 | 51 | 111 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-18 | 54 | 115 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.19E-16 | 56 | 112 | No hit | No description |
Pfam | PF00046 | 1.0E-16 | 56 | 110 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-22 | 57 | 118 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.5E-5 | 82 | 91 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 86 | 109 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.5E-5 | 91 | 107 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.0E-8 | 111 | 145 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence Send to blast |
MEWNGSTRRY VPRPEASLSF LYNYNYTPYP GMEVKEQTLA ETSSSMEKIN CGSQEKKKRL 60 TSEQLDSLES SFQKEIKLDP DRKMKLSKEL GLQPRQIAVW FQNRRARWKN KQLEHLYDSL 120 KEEFDVISKE KQKLEEEVMK LKAMVREQAS RTQVSTGYTE ISGEETVEST SEALRCSKRG 180 TLHHHHQQQQ QQNIGEGNCS AFTLEDYNTV PVLPYWPGVN VPYYP |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 103 | 111 | RRARWKNKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_06184 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT098009 | 0.0 | BT098009.1 Soybean clone JCVI-FLGm-11N12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020210274.1 | 1e-169 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 4e-50 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A151U348 | 1e-167 | A0A151U348_CAJCA; Putative homeobox-leucine zipper protein ATHB-51 | ||||
STRING | GLYMA13G21330.1 | 1e-145 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03790.1 | 2e-52 | homeobox 51 |
Publications ? help Back to Top | |||
---|---|---|---|
|