PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_05951

Common Name

KK1_006100

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NF-YB

Protein Properties

Length: 193aa MW: 21908 Da PI: 7.2812

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_05951	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	128.2	3e-40	25	119	2	96
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 ++++r+lPia v r+++kvlP+n+k+s+++ke + ecv+efisf+t ea++kc++e+rkti+++dl++a+ +lGfe y++ l yl++yr+ +++ C.cajan_05951 25 KQENRYLPIACVHRLIRKVLPKNTKVSDESKEKIMECVTEFISFITVEANHKCKEEQRKTITAEDLIHAMDKLGFEPYAKLLLFYLHRYRQHHQA 119 689***************************************************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.8E-38	20	121	IPR009072	Histone-fold
SuperFamily	SSF47113	3.73E-30	27	120	IPR009072	Histone-fold
Pfam	PF00808	5.4E-20	30	94	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.4E-11	58	76	No hit	No description
PRINTS	PR00615	5.4E-11	77	95	No hit	No description
PRINTS	PR00615	5.4E-11	96	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MIIDKSWCVL DSKGEGNSSN GEEQKQENRY LPIACVHRLI RKVLPKNTKV SDESKEKIME 60 CVTEFISFIT VEANHKCKEE QRKTITAEDL IHAMDKLGFE PYAKLLLFYL HRYRQHHQAN 120 QVPHRAPLSL PALPTIANYA HAVLPPPPQP FLPFPNPTMD AFYGDASINI GANINVNYDN 180 AAYFNAHNFF GGN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	6e-35	25	115	7	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269\|PubMed:12509518, ECO:0000269\|PubMed:17322342}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_05951

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020222926.1	1e-135	nuclear transcription factor Y subunit B-1
Swissprot	Q84W66	8e-35	NFYB6_ARATH; Nuclear transcription factor Y subunit B-6
TrEMBL	A0A151U2F1	1e-143	A0A151U2F1_CAJCA; Nuclear transcription factor Y subunit B-6

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2728	32	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	2e-37	nuclear factor Y, subunit B6

Publications ? help Back to Top
Jia H,McCarty DR,Suzuki M Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression. Plant Physiol., 2013. 163(3): p. 1293-305 [PMID:24043445] Kim HU, et al. Ectopic overexpression of castor bean LEAFY COTYLEDON2 (LEC2) in Arabidopsis triggers the expression of genes that encode regulators of seed maturation and oil body proteins in vegetative tissues. FEBS Open Bio, 2013. 4: p. 25-32 [PMID:24363987] Gnesutta N,Saad D,Chaves-Sanjuan A,Mantovani R,Nardini M Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants. Mol Plant, 2017. 10(4): p. 645-648 [PMID:27871811] Li D, et al. MYB89 Transcription Factor Represses Seed Oil Accumulation. Plant Physiol., 2017. 173(2): p. 1211-1225 [PMID:27932421] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Han JD, et al. Evolutionary Analysis of the LAFL Genes Involved in the Land Plant Seed Maturation Program. Front Plant Sci, 2017. 8: p. 439 [PMID:28421087]