PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_05768

Common Name

KK1_005911

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

SRS

Protein Properties

Length: 348aa MW: 36620.6 Da PI: 8.4908

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_05768	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	219.5	7.4e-68	133	292	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 gt++CqdCGnqakkdC+ +RCRtCCksrgfdC thvkstWvpaa+rrerq ++aa+++ a +s +++ +k++r ++q+++s+t++s++++++ C.cajan_05768 133 GGTTTCQDCGNQAKKDCVNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTAATAAVAGSSGSTSGTKKPRLI--ASQTTTSHTSTSNTTPPR 226 5789*********************************************9999999999999999999999975..9999999******* PP DUF702 99 eletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++tss lP +v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqG+e+ C.cajan_05768 227 SFDTSSshqdagfkesLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHVFKGFLYDQGVEN 292 999******************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.4E-62	135	291	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.9E-27	137	179	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.8E-29	243	290	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MWSGATRSIN YPEMGMFVVA PASSFHHHHQ QIPPPHDPVV ADSLNPATAL GVGVSVIPLL 60 AATPCLESDN ILGNRTRGGG IQFWQEPQPP QPHQGHYMKK QHQDLLNHNN NNSSPGNLLQ 120 NSGGVTGSGT SSGGTTTCQD CGNQAKKDCV NRRCRTCCKS RGFDCPTHVK STWVPAARRR 180 ERQLMTAATA AVAGSSGSTS GTKKPRLIAS QTTTSHTSTS NTTPPRSFDT SSSHQDAGFK 240 ESLPGQVRAP AVFKCVRVTA VEDGQDEYAY QAVVKIGGHV FKGFLYDQGV ENRDVYPNLS 300 ELHLGGGSGS GGSGGRNGVS SSSPMMDPSD VYGGGLLGGS SAYGNPMN

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MWSGATRSIN YPEMGMFVVA PASSFHHHHQ QIPPPHDPVV ADSLNPATAL GVGVSVIPLL  60
AATPCLESDN ILGNRTRGGG IQFWQEPQPP QPHQGHYMKK QHQDLLNHNN NNSSPGNLLQ  120
NSGGVTGSGT SSGGTTTCQD CGNQAKKDCV NRRCRTCCKS RGFDCPTHVK STWVPAARRR  180
ERQLMTAATA AVAGSSGSTS GTKKPRLIAS QTTTSHTSTS NTTPPRSFDT SSSHQDAGFK  240
ESLPGQVRAP AVFKCVRVTA VEDGQDEYAY QAVVKIGGHV FKGFLYDQGV ENRDVYPNLS  300
ELHLGGGSGS GGSGGRNGVS SSSPMMDPSD VYGGGLLGGS SAYGNPMN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_05768

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	2e-93	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029131012.1	0.0	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	2e-83	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A151U1T7	0.0	A0A151U1T7_CAJCA; Uncharacterized protein
STRING	XP_007141493.1	1e-177	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	7e-69	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]