PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_05711
Common NameKK1_005852
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HSF
Protein Properties Length: 274aa    MW: 31680 Da    PI: 7.4305
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_05711genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.5e-35261172102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d+ +++++sw +++++fvv  + efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv  ++         weF++++F+kg k+ll++i
  C.cajan_05711  26 FLTKTYQLVDDPCTDHIVSWGDDETTFVVRRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVAADR---------WEFANEYFRKGAKHLLCEI 112
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k+
  C.cajan_05711 113 HRRKT 117
                    ***96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3717110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-5522115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.09E-3223115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAFTLDRCDD NMVFTMESQK SVPAPFLTKT YQLVDDPCTD HIVSWGDDET TFVVRRPPEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFKKVA ADRWEFANEY FRKGAKHLLC EIHRRKTPHH  120
YQQHYHMHDH PPSQLLQPEE NLCWIDAPPL PSPKPGTDIL TALSEDNQRL RRKNFMLLSE  180
LTHMKNLYND IIYFIQNHVT PASYEQRSSS AILKLVELDS SPQSPNVVVR PAKGHVMEKS  240
LMISSSEEAN SSVKLFGVPL CGKKRVHPGD LDQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-201611711122Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_05711
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0925440.0BT092544.1 Soybean clone JCVI-FLGm-11O9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020210365.10.0heat stress transcription factor B-4b
SwissprotQ7XHZ04e-88HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLA0A151U1R70.0A0A151U1R7_CAJCA; Heat stress transcription factor B-4b
STRINGXP_007141514.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.14e-84heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]