PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_05465

Common Name

KK1_005600

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

bZIP

Protein Properties

Length: 369aa MW: 39662.9 Da PI: 6.8582

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_05465	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.4	2e-10	171	223	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l ++ C.cajan_05465 171 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTT 223 9*****************************************99988876655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.3E-16	167	231	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.749	169	232	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.5E-9	171	226	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.04E-11	171	222	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.3E-8	171	225	No hit	No description
CDD	cd14703	1.77E-23	172	221	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MQDPSSNPNS NPNPNPHNAT AASQLPRPPP STAATAAAAG TSSSSLFPRP GGSHHRRAHS 60 EVSFRLPDDM MDLSPSDPFA GGSSTASMEE IGSEDDLFST YIDVGKFGGA NGSGGGGNGA 120 DPNSELEKSP ARPRHRHSSS VDGSSSFGEI MEAKKAMPPD KLAELWTIDP KRAKRILANR 180 QSAARSKERK ARYIQELERK VQTLQTEATT LSAQLTLYQR DTTGLSTENT ELKLRLQAME 240 QQAQLRDALN EALKKEVERL KVATGEIMSH TESFNLGMHQ MPFTGSNFVP IPPQSGPPGH 300 QNIQMPPFGH SPSTMATHQM HQTSSHPLSE ILQNDQLGRF QGLDISSKGS TLVKSEGPSL 360 SASESSTTF

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MQDPSSNPNS NPNPNPHNAT AASQLPRPPP STAATAAAAG TSSSSLFPRP GGSHHRRAHS  60
EVSFRLPDDM MDLSPSDPFA GGSSTASMEE IGSEDDLFST YIDVGKFGGA NGSGGGGNGA  120
DPNSELEKSP ARPRHRHSSS VDGSSSFGEI MEAKKAMPPD KLAELWTIDP KRAKRILANR  180
QSAARSKERK ARYIQELERK VQTLQTEATT LSAQLTLYQR DTTGLSTENT ELKLRLQAME  240
QQAQLRDALN EALKKEVERL KVATGEIMSH TESFNLGMHQ MPFTGSNFVP IPPQSGPPGH  300
QNIQMPPFGH SPSTMATHQM HQTSSHPLSE ILQNDQLGRF QGLDISSKGS TLVKSEGPSL  360
SASESSTTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_05465

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020237662.1	0.0	transcription factor RF2b
Swissprot	O22873	1e-104	BZP18_ARATH; bZIP transcription factor 18
Swissprot	Q6S4P4	1e-104	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A151U0Z4	0.0	A0A151U0Z4_CAJCA; Transcription factor RF2b
STRING	XP_007142045.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	2e-87	basic leucine-zipper 52

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]