PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_05245
Common NameKK1_005375
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family SBP
Protein Properties Length: 758aa    MW: 84516.3 Da    PI: 6.7918
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_05245genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP116.21.8e-3695171177
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                    +Cqv++C+ad+s++k yhrrh+vC  +++a++vl++g+ +r+CqqC++fh ls+fDe+krsCrr+L++hn rrr+k 
  C.cajan_05245  95 RCQVPACQADISQLKGYHRRHRVCLLCANAATVLLHGEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKP 171
                    6************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.7E-2790157IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.1293170IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.76E-3394172IPR004333Transcription factor, SBP-box
PfamPF031102.3E-2696170IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
ITMDDAEDPS SLWDFSYLLD FNLDENDNSL SLPLPDPPPE IPNDNKVRKR DPRLTCSNFL  60
AGRVPCACPE LDAKLDDVGL PAKKRPRASA SASARCQVPA CQADISQLKG YHRRHRVCLL  120
CANAATVLLH GEAKRYCQQC GKFHVLSDFD EGKRSCRRKL ERHNTRRRRK PPADSSGDAL  180
NEAEPASANQ NEENNCDVDA QKDGSNLSAE VNEKGVSPDP EDDEPVPIPG SAPDAQNINN  240
DTVVSLAVSG DTRVNSGNTS NSPSYCDKSA YSSMCQTGRI SFKLYDWNPA EFPRRLRHQI  300
FQWLASMPLE LEGYIRPGCT ILTVFIAMPN IMWINLFRDS LDYVHDLVAP GKMLSGRGTA  360
LVHLNDMIFR VMKDGTSVTR VEVSMQAPRL HYVHPTYFEA GKPMEFVVCG SNLLQPKFRL  420
LVSFSGKYLK CEYCVPSPHN WTEENISCAF DNQLYKIYVP HTEKSFLGPA FIEVENESGL  480
SNFIPVLIGD KEICTEMKTL QQKLDVSLLS KEFRSASGYS ICSSCETFAL SHTSSSDLLV  540
DIAWLLKDTI SENFDRVMTA SQINRYCHLL DFLICNDSTI ILGKILPNLI ILTESMKSNN  600
IVINRTSDVD MTQLLNHIHN ARNAIYQKHQ KGGGIIVHSE MEGYQLVQGC SQDNNLSVAV  660
NSQGILSRAD AKWGVLKSPT SNDKNERIPL LKRDIIMNVE ELPGRYGRRC LGRGFLISRP  720
AIFVIVSVAV CLGVCVAVLH PGRISELAVS VRRCLFNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A2e-4094171481squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18187AKKRPRA
2156168RRKLERHNTRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_05245
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020236266.10.0squamosa promoter-binding-like protein 7
TrEMBLA0A151U0K70.0A0A151U0K7_CAJCA; Squamosa promoter-binding-like protein 7 (Fragment)
STRINGGLYMA15G10620.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.10.0squamosa promoter binding protein-like 7