PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_05123 | ||||||||
Common Name | KK1_005252 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 259aa MW: 28395.7 Da PI: 7.3228 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 95.7 | 3.7e-30 | 52 | 108 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY+eC+kNhA+s GghavDGC+Efm++ ge+gt +a+ CaAC+CHRnFHR+e++ e C.cajan_05123 52 AVRYRECQKNHAVSFGGHAVDGCCEFMAA-GEDGTLEAVICAACNCHRNFHRKEMDGE 108 79**************************9.999*********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-19 | 53 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 7.3E-28 | 53 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.1E-26 | 54 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.049 | 55 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.09E-21 | 183 | 257 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-32 | 185 | 258 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.1E-25 | 196 | 253 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEFDDQEEQD EEMGMPEPPH PPPPPSYDSV GNSARSKIGA AEGRKGAFGA AAVRYRECQK 60 NHAVSFGGHA VDGCCEFMAA GEDGTLEAVI CAACNCHRNF HRKEMDGEMS SFHHRQPPPP 120 PLHHHHQFSP YYHHRIPQHP PGAGYLHHPL ATPPMAQHRP LALPAAASGG GLSRDEEDMS 180 NPSSSGGGGG GGGGSKKRFR TKFTQEQKDK MLAFAEQLGW RIQKHDESAV EQFCAETNVK 240 RNVLKVWMHN NKNTLGKKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-29 | 195 | 254 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 184 | 194 | SGGGGGGGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_05123 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020206398.1 | 0.0 | zinc-finger homeodomain protein 2 | ||||
Swissprot | Q9SB61 | 5e-77 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A151U090 | 0.0 | A0A151U090_CAJCA; ZF-HD homeobox protein At4g24660 family | ||||
STRING | GLYMA14G35770.1 | 1e-134 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-66 | homeobox protein 22 |
Publications ? help Back to Top | |||
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