PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_04979
Common NameKK1_005101
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MIKC_MADS
Protein Properties Length: 331aa    MW: 37810.4 Da    PI: 5.5227
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_04979genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.91.2e-27958150
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                   krien  nrqvtfskRrng++KKA+ELS+LCd+++avi+fss+g+++ +s
  C.cajan_04979  9 KRIENPANRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSSSGRVHHFS 58
                   79*********************************************997 PP
2K-box27.11.7e-101201881179
          K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                    +++ e+lqqe+++L++++++ ++++R +  + L+  s+++L++ e+qL + l+++ ++K+ ll +++++
  C.cajan_04979 120 NSEIEELQQEVNRLQQQLQMAEEQIRLYEPDPLKMTSMEDLENSEKQLVDVLTRVIQRKEYLLSNHLST 188
                    57899***********************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.067161IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-29279IPR002100Transcription factor, MADS-box
CDDcd002651.47E-37275No hitNo description
PRINTSPR004046.2E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-263859IPR002100Transcription factor, MADS-box
PfamPF014865.9E-7122188IPR002487Transcription factor, K-box
PROSITE profilePS512977.315123216IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRVKLEIKR IENPANRQVT FSKRRNGLIK KAYELSILCD IDIAVIMFSS SGRVHHFSGR  60
KRIEDVLTRY INLPDQERDN AVSFPELPYR SILQYLLRTL QQLRSENDIA LQLANPGDIN  120
SEIEELQQEV NRLQQQLQMA EEQIRLYEPD PLKMTSMEDL ENSEKQLVDV LTRVIQRKEY  180
LLSNHLSTYD PSGIQGIPTS FENVGWLQDG SQNHAQIFDA SAPLDPLRDL SSTVYGSFSQ  240
GTSSNVDPRG MGECHVSNPS DGNLQAWPQG YTLYPHMQHD MVGPDMPDMM PHGQVNIPIT  300
ASHVEPPKNE HVEYDQSKQP HHQHQHQLNA Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-17190191MEF2 CHIMERA
6bz1_B1e-17190191MEF2 CHIMERA
6bz1_C1e-17190191MEF2 CHIMERA
6bz1_D1e-17190191MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_04979
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0897450.0BT089745.1 Soybean clone JCVI-FLGm-14M9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020228064.10.0agamous-like MADS-box protein AGL104 isoform X2
SwissprotQ9LM461e-112AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A151TZS20.0A0A151TZS2_CAJCA; MADS-box transcription factor 6
STRINGGLYMA14G34160.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85252735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.17e-90AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]