PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_04687 | ||||||||
Common Name | KK1_004807 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 381aa MW: 42236.8 Da PI: 9.4311 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.9 | 1.8e-05 | 70 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F r nL+ H r H C.cajan_04687 70 FVCEICQKGFQRDQNLQLHRRGH 92 89*******************88 PP | |||||||
2 | zf-C2H2 | 13 | 0.00031 | 146 | 168 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + C.cajan_04687 146 WKCEKCSKRYAVQSDWKAHSKIC 168 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.5E-5 | 69 | 92 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.17E-7 | 69 | 92 | No hit | No description |
SMART | SM00355 | 0.032 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.658 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 111 | 141 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.6E-5 | 134 | 167 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.17E-7 | 141 | 166 | No hit | No description |
SMART | SM00355 | 130 | 146 | 166 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
NMSNLTSASS EISASSGIRN DNGSLYAQYS STSINQEPQP KKKRSLPGHP DPGAEVIALT 60 PQTLLATNRF VCEICQKGFQ RDQNLQLHRR GHNLPWKLKK KSSKEGRKKV YVCPEATCVH 120 HDPSRALGDL TGIKKHFFRK HGEKKWKCEK CSKRYAVQSD WKAHSKICGT RDYKCDCGTI 180 FSRRDSFITH RAFCDALAQD SIRAVNLHPH PLLSTHTQFH SHALQAPPSF LKREQEFNLL 240 SPEILSWLAS PTAEEEAAAM FHNQTIRTLD LTHVNHSLNP NPNPTTSPTA TTLLPNSLSC 300 FHYFTNPPHV SATALLQKAS QIGSAAPSQV RPHLLLQQVH VPHDECTTTG YYMASSSAVS 360 GIVMPSREEI GTGGFARGMA S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 9e-34 | 142 | 207 | 3 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 9e-34 | 142 | 207 | 3 | 68 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 108 | KLKKKSSKEGRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_04687 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-143 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020223535.1 | 0.0 | protein indeterminate-domain 7 | ||||
Refseq | XP_020223551.1 | 0.0 | protein indeterminate-domain 7 | ||||
Refseq | XP_020223557.1 | 0.0 | protein indeterminate-domain 7 | ||||
Refseq | XP_020223567.1 | 0.0 | protein indeterminate-domain 7 | ||||
Swissprot | Q9SCQ6 | 1e-110 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A151TYU6 | 0.0 | A0A151TYU6_CAJCA; Zinc finger protein MAGPIE (Fragment) | ||||
STRING | XP_007161022.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-103 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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