PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_04665
Common NameKK1_004785
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 583aa    MW: 65170.5 Da    PI: 4.7685
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_04665genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.44.9e-1372135832374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    ++lL++cA+a+s+g+ e+a++++++l++++s +gdp qR+aay++e+Laar+a+s++ +y+al+++e +   ss++laa+++++ev+P++kf++++
  C.cajan_04665 213 KQLLYDCARALSEGNEEEATSMINNLRQIVSIQGDPSQRIAAYMVEGLAARVASSGKCIYQALRCKEPP---SSDRLAAMQILFEVCPCFKFGFMA 305
                    589*****************************************************************9...9*********************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    aN aI eav  e++vHi+DfdisqG+Q+++L+q+Las p+ pp++R+Tgv++pes+      l+ +g+rL+k+Aeelg+pfef++ va+r++ +++
  C.cajan_04665 306 ANGAIAEAVRDEKKVHIVDFDISQGTQYITLIQTLASMPGRPPHVRLTGVDDPESVqrPVGGLNIVGQRLEKLAEELGLPFEFHA-VASRTSLVTP 400
                    ******************************************************99888899***********************.7********* PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                     +L++++gEal+Vn+++qlh++ldesvs+ +erd++L++vksl+Pk+v+vveq++++n+++Fl+rf+ea +yysa+f +l+a+lpres++r++vEr
  C.cajan_04665 401 PMLNCRQGEALVVNFAFQLHHMLDESVSTVNERDQLLRMVKSLNPKLVTVVEQDMNTNTSPFLQRFVEAYNYYSAVFHTLDATLPRESQDRMNVER 496
                    ************************************************************************************************ PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    ++l+++ivn++aceg++r+er e ++kWr+rl++aGF++ p+s+++ + ++ l+ k + + ++++ee g+l +gW+d++L+++SaW+
  C.cajan_04665 497 QCLAKDIVNIIACEGEDRIERYEVAGKWRARLRMAGFTSSPMSTNVREAIRKLIVKQYCERFKIKEEMGALHFGWEDKNLIVASAWK 583
                    **********************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.546186563IPR005202Transcription factor GRAS
PfamPF035141.7E-134213583IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MSLVISTELA DASYRNAKLY TLKGTDVTPG LSSHSFAPDK HRNMYVTNSY SSEISYEKYF  60
RDSPTEELIE PSSSSISANS VHPDAASSYL LRASSGASVI ADNPFDSSIL STRHHSGSSQ  120
SNFVENESPD CLDFDGEMRL KLLELERALL SDEEEEEEDI FETVQSMEID REVAEWANPL  180
QDMLLHDSPK ESSSSDCSNL SSISSSTKEM TPKQLLYDCA RALSEGNEEE ATSMINNLRQ  240
IVSIQGDPSQ RIAAYMVEGL AARVASSGKC IYQALRCKEP PSSDRLAAMQ ILFEVCPCFK  300
FGFMAANGAI AEAVRDEKKV HIVDFDISQG TQYITLIQTL ASMPGRPPHV RLTGVDDPES  360
VQRPVGGLNI VGQRLEKLAE ELGLPFEFHA VASRTSLVTP PMLNCRQGEA LVVNFAFQLH  420
HMLDESVSTV NERDQLLRMV KSLNPKLVTV VEQDMNTNTS PFLQRFVEAY NYYSAVFHTL  480
DATLPRESQD RMNVERQCLA KDIVNIIACE GEDRIERYEV AGKWRARLRM AGFTSSPMST  540
NVREAIRKLI VKQYCERFKI KEEMGALHFG WEDKNLIVAS AWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6921958226378Protein SCARECROW
5b3h_A1e-6921958225377Protein SCARECROW
5b3h_D1e-6921958225377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_04665
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234363.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A151TYQ10.0A0A151TYQ1_CAJCA; Scarecrow-like protein 1
STRINGXP_007161385.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]