PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_04496
Common NameKK1_004608
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 545aa    MW: 60720.6 Da    PI: 6.3645
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_04496genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS408.65.9e-1251775454374
           GRAS   4 lLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                    +L  cA+avs++d   a+  + + l  ++s +gdp+qRl ay++e+L+arl +s++ +yk+l++++ +   s+e +++++++++++P+ kf+++ a
  C.cajan_04496 177 VLKVCAQAVSDDDIPIARGWMDNvLGRMVSVSGDPIQRLGAYLLEGLRARLESSGNLIYKSLKCEQPT---SQELMSYMHILYQICPYWKFAYISA 269
                    6788***************998626777***************************************9...999999******************* PP

           GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    N  I ea+++e+r+HiiDf+i qG+QW  L+qaLa Rp+gppslR+Tgv++++s   +   l+ +gerL+++A+++gvpfef+  +a +  d+   
  C.cajan_04496 270 NAVIEEAMANESRIHIIDFQIAQGTQWYLLIQALAHRPGGPPSLRVTGVDDSQSIhaRGGGLQIVGERLTDYARSCGVPFEFHS-AAISGCDVVRG 364
                    ***************************************************9988889999***********************.67677777799 PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                    ++++++gEalaVn+ + lh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F++rf+e+l+yy+a+f+s+++  pr++++ri+ E++
  C.cajan_04496 365 NIEIRHGEALAVNFPYVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFHRFVETLDYYTAMFESIDVACPRDDKKRISAEQH 460
                    ************************************************************************************************ PP

           GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +++r+ivn++aceg er+erhe l+kWr rl++aGFk+ ++s+++++  + ll+ ++++ yr+e+++g+l+lgW++r + + SaWr
  C.cajan_04496 461 CVARDIVNMIACEGVERVERHELLGKWRLRLSMAGFKQCAFSSSVMAATQNLLKDFNQN-YRLEHKDGALYLGWMHRHMATSSAWR 545
                    *********************************************************66.*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.788148526IPR005202Transcription factor GRAS
PfamPF035142.1E-122177545IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MQTSQKHPSS AGVHFYHQPV QGIYQMLQSN LCHDSSSQGT TSVSFETCKE QYFTLESCPA  60
PTAFMDCDDS PSYASVSSKR TPFSPQGSQS CYSDHHQSSD NAYGSPISGL SSVDDGHGLK  120
HKLRELEISL LGLDESDIVD SCGCCMAKVG LQGASQLAKH DWDQIVENIP QLDLKGVLKV  180
CAQAVSDDDI PIARGWMDNV LGRMVSVSGD PIQRLGAYLL EGLRARLESS GNLIYKSLKC  240
EQPTSQELMS YMHILYQICP YWKFAYISAN AVIEEAMANE SRIHIIDFQI AQGTQWYLLI  300
QALAHRPGGP PSLRVTGVDD SQSIHARGGG LQIVGERLTD YARSCGVPFE FHSAAISGCD  360
VVRGNIEIRH GEALAVNFPY VLHHMPDESV STENHRDRLL RLVKSLSPKV VTLVEQESNT  420
NTSPFFHRFV ETLDYYTAMF ESIDVACPRD DKKRISAEQH CVARDIVNMI ACEGVERVER  480
HELLGKWRLR LSMAGFKQCA FSSSVMAATQ NLLKDFNQNY RLEHKDGALY LGWMHRHMAT  540
SSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-5518154425377Protein SCARECROW
5b3h_D4e-5518154425377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_04496
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0977040.0BT097704.1 Soybean clone JCVI-FLGm-22M20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020226109.10.0scarecrow-like protein 13
RefseqXP_029129049.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A151SU720.0A0A151SU72_CAJCA; Scarecrow-like transcription factor PAT1
STRINGGLYMA17G01150.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13