PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_04261 | ||||||||
Common Name | KK1_004365 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NF-YB | ||||||||
Protein Properties | Length: 129aa MW: 14614.3 Da PI: 5.3142 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 171.3 | 1e-53 | 17 | 113 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +reqd++lPianv+rimk++lP nakisk++ket+qecvsefisfvtseas+kc+re+rkt+ngdd++wala+lGf+dy+epl+ yl++yrele + C.cajan_04261 17 MREQDQLLPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRRERRKTVNGDDVCWALASLGFDDYAEPLRRYLHRYRELEVD 112 59********************************************************************************************98 PP NF-YB 97 k 97 + C.cajan_04261 113 R 113 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.1E-51 | 11 | 121 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.32E-38 | 20 | 120 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-26 | 23 | 87 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.9E-19 | 51 | 69 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 54 | 70 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 4.9E-19 | 70 | 88 | No hit | No description |
PRINTS | PR00615 | 4.9E-19 | 89 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MVDNIGGSSS NAENSGMREQ DQLLPIANVG RIMKQILPPN AKISKESKET MQECVSEFIS 60 FVTSEASEKC RRERRKTVNG DDVCWALASL GFDDYAEPLR RYLHRYRELE VDRSTNQDRG 120 NSPLTREGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 3e-45 | 17 | 108 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 3e-45 | 17 | 108 | 1 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_04261 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-125 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020225500.1 | 1e-92 | nuclear transcription factor Y subunit B-5 | ||||
Swissprot | O82248 | 3e-55 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | A0A151STB2 | 3e-91 | A0A151STB2_CAJCA; Nuclear transcription factor Y subunit B-5 | ||||
STRING | XP_007154257.1 | 2e-79 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF805 | 32 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 1e-48 | nuclear factor Y, subunit B5 |
Publications ? help Back to Top | |||
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