PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_04129
Common NameKK1_004230
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 289aa    MW: 32720.9 Da    PI: 9.6643
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_04129genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14e-181863147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed++l+++vkq+G+ +W+ Ia+++  gR++k+c++rw++ 
    C.cajan_04129 18 RGHWRPSEDDRLKKLVKQYGPQNWNFIAEHLE-GRSGKSCRLRWYNQ 63
                     899*****************************.************96 PP
2Myb_DNA-binding46.21.1e-1470114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++T+e++e l+ ++++ G++ W++Iar ++ g+t++++k++++ +
    C.cajan_04129  70 KKPFTEEDEEMLLALHNLKGNK-WTAIARFFP-GKTDNSVKNHFHVL 114
                      689*******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.7691368IPR017930Myb domain
SuperFamilySSF466892.21E-2817111IPR009057Homeodomain-like
SMARTSM007178.9E-161766IPR001005SANT/Myb domain
PfamPF002496.9E-171864IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-251971IPR009057Homeodomain-like
CDDcd001672.32E-142162No hitNo description
PROSITE profilePS5129415.88169119IPR017930Myb domain
SMARTSM007172.9E-1369117IPR001005SANT/Myb domain
PfamPF002491.6E-1270114IPR001005SANT/Myb domain
CDDcd001674.97E-1072115No hitNo description
Gene3DG3DSA:1.10.10.601.1E-1772117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEKASSSNNG ESRKSCSRGH WRPSEDDRLK KLVKQYGPQN WNFIAEHLEG RSGKSCRLRW  60
YNQLDPNIIK KPFTEEDEEM LLALHNLKGN KWTAIARFFP GKTDNSVKNH FHVLMARRER  120
ERLALFGDSF DHNSQISFNF IKNKALFDKL PTPWTSFSGS STITSSAREK VPLFDNYLEL  180
DHFSSYSSPS SVGSSILDSY HSFTAPGLPS VGKVVPLPQK ISNYGCDHKT KDTIKSCKRG  240
KHARDRSMTL CKLSTNEQEP LDDLKQKGVS FIDFLGVGIS ISDDSIRGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-31181184104MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-31181184104C-Myb DNA-Binding Domain
1msf_C5e-31181184104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_04129
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029129006.11e-153transcription factor MYB56
TrEMBLA0A151ST670.0A0A151ST67_CAJCA; Myb-like protein A
STRINGXP_007137729.11e-133(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.16e-59myb domain protein 69