PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_04108 | ||||||||
Common Name | KK1_004207 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ARR-B | ||||||||
Protein Properties | Length: 509aa MW: 56680.7 Da PI: 5.5689 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.9 | 1.1e-28 | 195 | 248 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl C.cajan_04108 195 KPRVVWSVELHQQFVAAVDQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 248 79*******************.********************************8 PP | |||||||
2 | Response_reg | 76.2 | 1.2e-25 | 17 | 125 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 vl+vdD+p+ +++l+++l+ y ev+ + +e al ll+e++ +D+++ D+ mp+mdG++ll+ i e +lp+i+++a + ++ + + + Ga C.cajan_04108 17 VLVVDDDPTCLMILEKMLRTCLY-EVTKCNRAETALSLLRESKngFDIVISDVHMPDMDGFKLLELIGLEM-DLPVIMMSADDGKSVVMKGVTHGA 110 89*********************.***************999999**********************6644.8*********************** PP SEEEESS--HHHHHH CS Response_reg 95 kdflsKpfdpeelvk 109 d+l Kp+ +e+l + C.cajan_04108 111 CDYLIKPVRIEALKN 125 ***********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.7E-173 | 1 | 498 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.1E-41 | 14 | 156 | No hit | No description |
SuperFamily | SSF52172 | 4.84E-35 | 14 | 138 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.1E-29 | 15 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.603 | 16 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 8.0E-23 | 17 | 125 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.60E-27 | 18 | 130 | No hit | No description |
SuperFamily | SSF46689 | 4.48E-20 | 192 | 252 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.518 | 192 | 251 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-30 | 194 | 253 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.0E-25 | 195 | 248 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-7 | 197 | 247 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0071368 | Biological Process | cellular response to cytokinin stimulus | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MKSSDAVSDQ FPAGLRVLVV DDDPTCLMIL EKMLRTCLYE VTKCNRAETA LSLLRESKNG 60 FDIVISDVHM PDMDGFKLLE LIGLEMDLPV IMMSADDGKS VVMKGVTHGA CDYLIKPVRI 120 EALKNIWQHV VRKRKNEWKD TEQSGSAEEG DRQPKASDEA DYSSSANEGS WRNSKKRRDE 180 EDEAEERDDT STLKKPRVVW SVELHQQFVA AVDQLGIDKA VPKKILELMN VPGLTRENVA 240 SHLQKYRLYL RRLNGVSQHQ NNMNNSFLGP QEGTFGTISS INGIDLQTLA VAGQLPAQSL 300 ATLQAAGLGR STAKAGVPMP IMDQRNLFSF ENPRLRFGEG QQQHLSSSKP VNLLHGIPTN 360 MEPKQLANLH HITTKGSFQD EVTSGIKGSG GFPSYDIFNE LHHHKSHHDW DITNPGLTYN 420 ASQHANPLQE GLQQDNLQNA GQHLNPLLVD NSIRVKAERI PDASSQTNLF PEHYGQEDLM 480 SALLKQQEGM GPAENEFEFD GYSLDNIPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 8e-22 | 194 | 254 | 4 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00054 | PBM | Transfer from AT4G16110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_04108 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-136 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020226556.1 | 0.0 | two-component response regulator ARR2 isoform X1 | ||||
Refseq | XP_020226557.1 | 0.0 | two-component response regulator ARR2 isoform X2 | ||||
Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | A0A151ST50 | 0.0 | A0A151ST50_CAJCA; Two-component response regulator | ||||
STRING | GLYMA07G37220.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3958 | 34 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-177 | response regulator 2 |