PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_03921
Common NameKK1_004012
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family SBP
Protein Properties Length: 844aa    MW: 93165.5 Da    PI: 7.8085
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_03921genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP75.49.5e-243473478
                   EETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP 34 lvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                   lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  C.cajan_03921  3 LVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 47
                   67899*************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114120.486145IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.66E-21250IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.107.7E-13332IPR004333Transcription factor, SBP-box
PfamPF031101.5E-15444IPR004333Transcription factor, SBP-box
SMARTSM00248470611640IPR002110Ankyrin repeat
SuperFamilySSF484039.33E-8612729IPR020683Ankyrin repeat-containing domain
CDDcd002041.60E-8613726No hitNo description
Gene3DG3DSA:1.25.40.201.2E-7614738IPR020683Ankyrin repeat-containing domain
SMARTSM0024872667697IPR002110Ankyrin repeat
PROSITE profilePS502978.561667739IPR020683Ankyrin repeat-containing domain
SMARTSM00248830707736IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MALVGNVMQR FCQQCSRFHV LQEFDEGKRS CRRRLAGHNR RRRKTHPDVT VINEGSLNDE  60
RGSSYLLMSL LRILTNLHSN GSDHTKNQDI LSHLLRNLAS LAGPINGRSL ASLLEESKGL  120
VNAGTPGAAH DKPNLISNGL NSRPSGSSIK TDNGIIIQDP PMSVAQCETV PANGRTQKCI  180
PSGDGGVGIL KPPSGLRQDN LPSQLTAAET TVGKGTLINF DLNNVYNDIQ STVETHKKPY  240
PCVASEMGSI GHPSWLQCDS LKSSPPQTSG NSDSTSTQSP SSSSGEAQSR TDRIVFKLFG  300
KDPNDFPLLL RSQILNWLSH SPTEIESYIR PGCIILTIYL RLEKSAWEEL YCNLGASLRK  360
LLAASNDSFW TTGWIYARVQ HTVAFLYNGQ VVLDVPLRLK SPQHCRISCI KPLAVPASAS  420
AQFIVKGFNL SQSSTRLLCA LEGKYLIHAN CHDLIDGADA PIQHLSFSCH IPSITGRGFI  480
EVVEDHGLSS CSFPFIVAEQ EVCAEICKLE NVIESAETTD DIQIKNQQIE EKTRALDFLQ  540
EMGWLLHRSH VKVRLGTMAP IHDLFPFKRF MWLIDFSMDH GWCAVMKKLL DIVSGGGVDA  600
GEHASVELAL LEMSLLHRAV KRNCRPMVEL LLRFVPVKTS DGADSEVKQV DKVPDRFLFR  660
PDAVGPAGLT PLHVAASMSG SENVLDALTD DPRMVGIEAW ESARDSTGST PIDYARLRGH  720
YSYIQLVQNK TNKKDERQHV VDIPGTVVDS NSKQKQTEGH RRCKVSSLQT EKIETTAMTQ  780
QCRVCQHKVA YGGMRIAVVY RPVMLSMVAI AAVCVCVALL FKSSPRVYYV FQPFNWESLE  840
YGAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-153444384squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_03921
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020226057.10.0squamosa promoter-binding-like protein 1
RefseqXP_020226058.10.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A151SSE40.0A0A151SSE4_CAJCA; Squamosa promoter-binding-like protein 1
STRINGGLYMA07G36180.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]