PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_03188

Common Name

KK1_003260

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

HSF

Protein Properties

Length: 443aa MW: 49847.8 Da PI: 4.8229

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_03188	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109	3.6e-34	17	107	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl k+ye+++d+++ e++sws+ +nsf+v+++ +f++ +Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+ weF+++ F +++k+ll++i C.cajan_03188 17 FLLKTYEMVDDSSTAEIVSWSSANNSFIVWNPADFSRLLLPTFFKHNNFTSFIRQLNTYGFRKVHPER---------WEFANEDFVRDQKHLLKNI 103 9**************************************************************999.........*************** PP XXXX CS HSF_DNA-bind 98 krkk 101 +r+k C.cajan_03188 104 HRRK 107 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	7.89E-34	13	106	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.5E-58	13	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	7.7E-37	13	106	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.4E-29	17	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-17	17	40	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-17	55	67	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	56	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-17	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MEGSGSGSGS GVGPAPFLLK TYEMVDDSST AEIVSWSSAN NSFIVWNPAD FSRLLLPTFF 60 KHNNFTSFIR QLNTYGFRKV HPERWEFANE DFVRDQKHLL KNIHRRKPIH SHTHPVADPE 120 RLAFEEEIEK LSHDKTTIQS SIFRFEQHHS AAKTHLEDLQ HRLDGMEERQ TTLLNYFEKA 180 LRNPTIVQQI SRRIESLDLL AYNKKRRLPQ VDDHDHPLHH PVPENSFVDN FGMEFGNISH 240 QDFSNKLTLE LSPAVSDMNL VVSCSTQSSN EDGESPHEIL PAQTGASFTF QMDSSESPKL 300 DSNGEDGDSY ISCLLNLTLA SSPLQVKRNS CTDRSPPQID CPEFGKLAES KSCADDNKEY 360 DVGESSSRNV NEVANLADAE APPDAPVRVN DVFWEQFLTE RPGCSDNDDS TSTHKANAYA 420 EQDEGRSVHE ISGNAINMDQ LTL

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MEGSGSGSGS GVGPAPFLLK TYEMVDDSST AEIVSWSSAN NSFIVWNPAD FSRLLLPTFF  60
KHNNFTSFIR QLNTYGFRKV HPERWEFANE DFVRDQKHLL KNIHRRKPIH SHTHPVADPE  120
RLAFEEEIEK LSHDKTTIQS SIFRFEQHHS AAKTHLEDLQ HRLDGMEERQ TTLLNYFEKA  180
LRNPTIVQQI SRRIESLDLL AYNKKRRLPQ VDDHDHPLHH PVPENSFVDN FGMEFGNISH  240
QDFSNKLTLE LSPAVSDMNL VVSCSTQSSN EDGESPHEIL PAQTGASFTF QMDSSESPKL  300
DSNGEDGDSY ISCLLNLTLA SSPLQVKRNS CTDRSPPQID CPEFGKLAES KSCADDNKEY  360
DVGESSSRNV NEVANLADAE APPDAPVRVN DVFWEQFLTE RPGCSDNDDS TSTHKANAYA  420
EQDEGRSVHE ISGNAINMDQ LTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-20	3	106	17	129	Heat shock factor protein 1
5d5v_B	2e-20	3	106	17	129	Heat shock factor protein 1
5d5v_D	2e-20	3	106	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_03188

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020227286.1	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-135	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A151SQG8	0.0	A0A151SQG8_CAJCA; Heat stress transcription factor A-5
STRING	XP_007163811.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4961	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-132	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]