PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_03139
Common NameKK1_003211
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NF-YA
Protein Properties Length: 328aa    MW: 35861.4 Da    PI: 9.3632
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_03139genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA981e-30160216158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    d p+YVNaKQy++I++RRq+Rak+  ++kl +k rkpy+heSRh hA+rRpRg+gGrF
  C.cajan_03139 160 DGPIYVNAKQYHGIIRRRQSRAKAVLNHKL-TKRRKPYMHESRHLHAMRRPRGCGGRF 216
                    57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.7E-35158219IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.936159219IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.6E-23162184IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.4E-27162216IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.6E-23193216IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAMQTVYLKE HEGNAHNFVG QLSSAASAPW WSAFGSQSVH GESCGQMKPF SLELPNCIDQ  60
LAATKPSTRG AEQVLGKGLT TQFTIFPDDC KMSDDAQKLQ TTISLQSSLA DPNSRFEIGF  120
SQPMICTKYP YTDQFYGLFS TYAQQISGRI MLPLNMTSDD GPIYVNAKQY HGIIRRRQSR  180
AKAVLNHKLT KRRKPYMHES RHLHAMRRPR GCGGRFLNTR NSVSGNGKSG NEVHKTVEQL  240
HSGGSQSSEF LQSEVGTMNS SKETNGSSPN ISGSEVTSMY SRGGLDSFSL NHLGSAVHSL  300
ADMIDGGRGM IIPPKWVAAA GNCCNLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A1e-17160217260HAPB protein
4g92_A1e-17160217260HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174193RRRQSRAKAVLNHKLTKRRK
2174194RRRQSRAKAVLNHKLTKRRKP
3175194RRQSRAKAVLNHKLTKRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_03139
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0925390.0BT092539.1 Soybean clone JCVI-FLGm-16A23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020226778.10.0nuclear transcription factor Y subunit A-10 isoform X1
TrEMBLA0A151SQ430.0A0A151SQ43_CAJCA; Nuclear transcription factor Y subunit A-10
STRINGXP_007162983.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.26e-64nuclear factor Y, subunit A10