PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_02905 | ||||||||
Common Name | Dof25, KK1_002974 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | Dof | ||||||||
Protein Properties | Length: 244aa MW: 27059.7 Da PI: 7.3101 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.2 | 2.1e-39 | 27 | 87 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+ss C.cajan_02905 27 NHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSS 87 57899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-26 | 25 | 80 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.5E-33 | 29 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.73 | 31 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 33 | 69 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MQEIHSIGGA RFFSGAADRR LRPHHQNHQA LKCPRCDSLN TKFCYYNNYN LSQPRHFCKN 60 CRRYWTKGGV LRNVPVGGGC RKSKRSSKPP SDSAPPPPPD PDRSSSDSST LTATATTHSH 120 SHSHMQHSVL ETTPLDQPSG TDSAAIFSEI GPFTASSSND SLAFAFPDAS SFPWQHPKRD 180 EEFSSLLDHT VDFSAKPPHA AFGPLDWHAT ADQGLFDLPN AVDHAYWTHS HWSDNDNSTL 240 FHLP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_02905 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP662917 | 0.0 | KP662917.1 Cajanus cajan Dof25 (Dof25) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020227888.1 | 0.0 | dof zinc finger protein DOF5.4 | ||||
Swissprot | Q8LDR0 | 3e-55 | DOF54_ARATH; Dof zinc finger protein DOF5.4 | ||||
TrEMBL | A0A0K8K648 | 1e-179 | A0A0K8K648_CAJCA; Dof protein | ||||
STRING | GLYMA05G07460.1 | 1e-101 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5998 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 5e-38 | OBF binding protein 4 |
Publications ? help Back to Top | |||
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