PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_02898 | ||||||||
Common Name | KK1_002967 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | SBP | ||||||||
Protein Properties | Length: 440aa MW: 48374.8 Da PI: 7.681 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 135.5 | 1.6e-42 | 169 | 244 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls++k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q C.cajan_02898 169 CQVYGCNKDLSSCKDYHKRHKVCEVHSKTATVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 244 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.2E-33 | 163 | 230 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.573 | 166 | 243 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.09E-39 | 167 | 247 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.5E-31 | 169 | 242 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MEPWSYVPEE KECVSNEGLS SPNTLGRNKN SFLGWELKTP CGFPNDMLGL GQHSIENQGF 60 EELGLPEMLG KQLSDDLIGS VQSRKVDGRQ QHSDRITSTV VDTPSGFSQR GYSNSKLSYS 120 NSLIDLKLGR FADHGDAPDL GFSKVLSSES STPPKRVRAS GLQSQTAYCQ VYGCNKDLSS 180 CKDYHKRHKV CEVHSKTATV IVNGIEQRFC QQCSRFHLLA EFDDGKRSCR KRLAGHNERR 240 RKPQMGIHSG KSGRLLQPCG DSRFQGNMLT SSFIRPEMLP SGIMHSDKYV GNEDFNVFDT 300 TSTVQGLSGI SDSCALSLLS SQSQNSSSQS SGIPLAHSLV IPSSHNHHYN ISQVSGKIGI 360 SSQTSSSRVS NSFPSELNHA DGNGIFQGSD FVNVKDRLSC EDGATINLLQ LSSQLQRVEH 420 DRQSLQVKQE NDSCCTLRIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-29 | 169 | 242 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_02898 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020226700.1 | 0.0 | squamosa promoter-binding-like protein 6 isoform X1 | ||||
TrEMBL | A0A151SPF2 | 0.0 | A0A151SPF2_CAJCA; Squamosa promoter-binding-like protein 6 | ||||
STRING | GLYMA0005S50.2 | 1e-174 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 8e-56 | SBP family protein |