PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_02676 | ||||||||
Common Name | KK1_002741 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 28006.1 Da PI: 8.2181 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.3 | 1.1e-12 | 66 | 112 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN +++Lr+l+Pk+ K++Ka+ L +++ +k+L C.cajan_02676 66 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIDQVKDL 112 79*************************8.....7***********9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.046 | 63 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-12 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-14 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.00E-9 | 66 | 115 | No hit | No description |
Pfam | PF00010 | 2.4E-10 | 66 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-10 | 69 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00158 | 159 | 194 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MENYYDSGWH MGTSWPQCSD HSSSFAIPAQ ILPHVSDSAS LQFGEFHSWP LPLEGVAEER 60 AISASKSHSQ AEKRRRDRIN AQLATLRKLI PKSDKMDKAA LLGSVIDQVK DLKRKAMDVS 120 RAFTVPTEID EVSIDYDHVQ DESCTKVSKL KENMVIKASV CCDDRPELFP ELIQVLKGLR 180 LTAVKAEIAS VGGRIKSILV LCSKDNEEGV CLTTLKQSLK SAVTKIASSN MASNCPTRSK 240 RQRFFLPSHC LE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_02676 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT089476 | 0.0 | BT089476.1 Soybean clone JCVI-FLGm-2E23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020228279.1 | 0.0 | transcription factor bHLH51 | ||||
TrEMBL | A0A151SNT5 | 0.0 | A0A151SNT5_CAJCA; Transcription factor bHLH51 | ||||
STRING | XP_007163561.1 | 1e-175 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5796 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 6e-51 | bHLH family protein |