PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_02571 | ||||||||
Common Name | KK1_002634 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | B3 | ||||||||
Protein Properties | Length: 359aa MW: 40402.1 Da PI: 8.1285 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.5 | 2.4e-18 | 221 | 312 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 vl ps+ + ++++lp fae++ +g++ ++l+ ++gr+W+v++ yr+++ l++GW eF +n+L egD++vF+l + +e l v++fr C.cajan_02571 221 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQLSNGRQWSVRCLYRGGR--AKLSQGWFEFTLENNLGEGDVCVFELLRVREVVLQVTIFR 311 78899******************876743...59999999********665555..66***********************999888889999998 PP S CS B3 99 k 99 C.cajan_02571 312 V 312 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-24 | 210 | 311 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.92E-24 | 211 | 312 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.75E-23 | 216 | 311 | No hit | No description |
SMART | SM01019 | 1.0E-18 | 218 | 313 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.029 | 218 | 313 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-16 | 221 | 312 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MYEGNSSFIV HMFNLSTSEV NYQSAMRNHN EGPCFANYHH IFDEMEDVDS LDLSDSSSPF 60 LTPGALQNKV FAGSVDQLTP GKSHTPALQN LFNGGSKLNR VNWGDGGSAF SSKGANSQGN 120 QSTTRDIGVQ FNAVEFKRST DELKLRYSTN EEAANKTAKK KRKSEPNGEE PSGENEEEAE 180 MRYRFYESAS ARKRTVTAEE RERAINAAKA FEPTNPFCRV VLRPSYLYRG CIMYLPSCFA 240 EKNLNGVSGF IKLQLSNGRQ WSVRCLYRGG RAKLSQGWFE FTLENNLGEG DVCVFELLRV 300 REVVLQVTIF RVTEDAGLLN SPPMQLQQQQ QQSSQNMSHT KLLNPHLQHR VSPTKLVRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 8e-74 | 184 | 314 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 8e-74 | 184 | 314 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_02571 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094686 | 0.0 | BT094686.1 Soybean clone JCVI-FLGm-24P12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020227708.1 | 0.0 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A151SNI2 | 0.0 | A0A151SNI2_CAJCA; B3 domain-containing transcription factor VRN1 | ||||
STRING | GLYMA20G01130.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 7e-63 | related to vernalization1 1 |