PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_02376
Common NameKK1_002438
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 309aa    MW: 34521.4 Da    PI: 6.8814
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_02376genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-05129148120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++C+ C+k+F+r  n++ H+
  C.cajan_02376 129 FSCTVCNKMFNRFNNMQMHM 148
                    89*****************9 PP
2zf-C2H213.80.00017214236123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +Cgk+F  + + ++H +++
  C.cajan_02376 214 FGCRKCGKPFAVRGDWRTHEKNC 236
                    56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.44E-5106150No hitNo description
Gene3DG3DSA:3.30.160.604.9E-5129148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.889129156IPR007087Zinc finger, C2H2
PROSITE patternPS000280131151IPR007087Zinc finger, C2H2
SuperFamilySSF576671.35E-5197234No hitNo description
Gene3DG3DSA:3.30.160.607.3E-5200234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0090502Biological ProcessRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0004526Molecular Functionribonuclease P activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MQTHSFSYIP SCPTSRSPFL EPDHDEGVDE ASISLSLGPP GQHHNPKATS SSSSNHPSST  60
LQYHFQQNPI SDDQRGVTVA LHIGLPSPST SPNSAIPTTK PDLHLPSAPI QGQYWIPSPA  120
QILIGPTQFS CTVCNKMFNR FNNMQMHMWG HGSQYRKGPE SLRGAKPASS MLRLPCYCCA  180
EGCKNNIDHP RSRPLKDFRT LQTHYKRKHG AKPFGCRKCG KPFAVRGDWR THEKNCGKLW  240
FCICGSDFKH KRSLKDHVRA FGDGHAPHTV ESCDQMGEDD LLGDEDDEEL ELEDDDEDYN  300
SNDVVFGFN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_02376
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020228741.10.0zinc finger protein WIP6
SwissprotQ9FX681e-118ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A151SN750.0A0A151SN75_CAJCA; Protein TRANSPARENT TESTA 1
STRINGXP_007153349.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-118C2H2-like zinc finger protein