PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_02296

Common Name

KK1_002353

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

SBP

Protein Properties

Length: 990aa MW: 110216 Da PI: 6.4556

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_02296	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.6	1.1e-40	133	210	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvCe+hska+++lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ C.cajan_02296 133 VCQVEDCSADLSKAKDYHRRHKVCEMHSKASKALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNH 210 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.0E-33	127	195	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.171	131	208	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.5E-38	132	213	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.0E-29	134	207	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	3.9E-7	731	878	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	6.31E-8	758	876	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.61E-6	764	875	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 990 aa Download sequence Send to blast
MEARFGAEAY HFYGVGASSD LRGLGKRSSE WDLNDWRWDG DLFIASRLNP VPADGVGVGQ 60 HFFPLGDPKG NKEGDKKRRV IVLEDDGLNE EAGTLSLKLG GHASTVVDRE VASWDGMNGK 120 KSRVSGSTSS RAVCQVEDCS ADLSKAKDYH RRHKVCEMHS KASKALVGNA MQRFCQQCSR 180 FHLLQEFDEG KRSCRRRLAG HNKRRRKTNH EVVPNGNSLN DDQTSSYLLI SLLKILSNMH 240 SDRSDQTTDQ DLLTHILRSL ASQNGEQGSK NISNLLREPE NLLREGGSSR KSEMVSTLFS 300 NGSQGSPTDT RKHETVSVAT MQQQMHAHDA RAADQHVMSS IKPSVSDSPP AYSEARDSTA 360 GQIKMNNFDL NDIYIDSDDG MEDLERLPVS TNLVTGSLDY PWTQQDSHQS SPPQTNGNSD 420 SASAQSPSSS SGEAQSRTDR IVFKLFGKEP NDFPLVLRAQ ILDWLSHSPT DMESYIRPGC 480 IVLTIYLRQA EALWEELCYD LTSSLSRLLD VSDDTFWRNG WVHIRVQHQM AFIFNGQVVI 540 DTSLPFRSHS YSKILTVSPI AVPASKKAQF SVKGVNLIRP ATRLMCALEG KYLPCEDADV 600 PMDQYSKESD ELQCIQFSCS VPVMNGRGFI EIEDQGLSSS FFPFIVVEED VCSEICALEP 660 LLELSETDPN IEGTGKIKAK NQAMDFIHEM GWLLHRSQMK LRMVQLNSSV DLFSLKRFKW 720 LIEFSIDHDW CAVVKKLLNL LLDGTVNTGD HPSLYIALSE MGLLHKAVRR NSKQLVELLL 780 RYVPENISYE LGPEGKALID GDNQTFLFRP DVVGPAGLTP LHIAAGKDDS EDVLDALTND 840 PCTVGIAAWK NARDSTGSTP EDYARLRGHY GYIHLVQKKI NKRQGATHVV VEIPSNTTEN 900 NTNQKQNESS TSFEIGKAEV RLSQRHCKVC DTKSSCRTAV GRSLVYRPAM LSMVAIAAVC 960 VCVALLFKSS PEVICMFRPF RWETLDFGTS

Sequence ? help Back to Top

Protein Sequence Length: 990 aa Download sequence Send to blast

MEARFGAEAY HFYGVGASSD LRGLGKRSSE WDLNDWRWDG DLFIASRLNP VPADGVGVGQ  60
HFFPLGDPKG NKEGDKKRRV IVLEDDGLNE EAGTLSLKLG GHASTVVDRE VASWDGMNGK  120
KSRVSGSTSS RAVCQVEDCS ADLSKAKDYH RRHKVCEMHS KASKALVGNA MQRFCQQCSR  180
FHLLQEFDEG KRSCRRRLAG HNKRRRKTNH EVVPNGNSLN DDQTSSYLLI SLLKILSNMH  240
SDRSDQTTDQ DLLTHILRSL ASQNGEQGSK NISNLLREPE NLLREGGSSR KSEMVSTLFS  300
NGSQGSPTDT RKHETVSVAT MQQQMHAHDA RAADQHVMSS IKPSVSDSPP AYSEARDSTA  360
GQIKMNNFDL NDIYIDSDDG MEDLERLPVS TNLVTGSLDY PWTQQDSHQS SPPQTNGNSD  420
SASAQSPSSS SGEAQSRTDR IVFKLFGKEP NDFPLVLRAQ ILDWLSHSPT DMESYIRPGC  480
IVLTIYLRQA EALWEELCYD LTSSLSRLLD VSDDTFWRNG WVHIRVQHQM AFIFNGQVVI  540
DTSLPFRSHS YSKILTVSPI AVPASKKAQF SVKGVNLIRP ATRLMCALEG KYLPCEDADV  600
PMDQYSKESD ELQCIQFSCS VPVMNGRGFI EIEDQGLSSS FFPFIVVEED VCSEICALEP  660
LLELSETDPN IEGTGKIKAK NQAMDFIHEM GWLLHRSQMK LRMVQLNSSV DLFSLKRFKW  720
LIEFSIDHDW CAVVKKLLNL LLDGTVNTGD HPSLYIALSE MGLLHKAVRR NSKQLVELLL  780
RYVPENISYE LGPEGKALID GDNQTFLFRP DVVGPAGLTP LHIAAGKDDS EDVLDALTND  840
PCTVGIAAWK NARDSTGSTP EDYARLRGHY GYIHLVQKKI NKRQGATHVV VEIPSNTTEN  900
NTNQKQNESS TSFEIGKAEV RLSQRHCKVC DTKSSCRTAV GRSLVYRPAM LSMVAIAAVC  960
VCVALLFKSS PEVICMFRPF RWETLDFGTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-31	125	207	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_02296

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020228850.1	0.0	squamosa promoter-binding-like protein 1
Refseq	XP_020228851.1	0.0	squamosa promoter-binding-like protein 1
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A151SMZ0	0.0	A0A151SMZ0_CAJCA; Squamosa promoter-binding-like protein 12
STRING	GLYMA10G01211.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]