PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_01772
Common NameKK1_001815
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 658aa    MW: 73076.2 Da    PI: 6.4232
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_01772genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.82e-1272676361373
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    lv+lL+ c++a+ s++ +++++++ +l +lasp+g+++ R+ ayfteALa r++r +++++++ ++s++   +++e+ +al+l+++v+Pi+kf h+
  C.cajan_01772 267 LVSLLTGCVDAIVSRNVSAINHFIGKLGDLASPKGSSISRICAYFTEALAIRVTRVWPHVFHISTTSRDM-VDEEENGTALRLLNQVTPIPKFLHF 361
                    6899*********************************************************876666664.67999999***************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    t N+++l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rL+ fAe+l++pfef++ v++rled++l+
  C.cajan_01772 362 TSNEMLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGE----SKQELNETGDRLSGFAEALNLPFEFHP-VVDRLEDVRLW 452
                    *****************************************************....***************************.7********** PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvEr 287
                    +L+vk++E++aVn+vlqlh++l +    +   +++L l++s++P vvv++eqea+hn++++ +r++++l+yysa+fd++ e+++++es  r+kvE+
  C.cajan_01772 453 MLHVKENETVAVNCVLQLHKTLYDGSGGA--LRDFLGLIRSTNPSVVVMAEQEAEHNEARLEARVCNSLKYYSAVFDCIeESGVGEESAVRAKVEE 546
                    *********************95543333..589*********************************************9999************* PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerl.eeaGFkpvplsekaakqaklllrkvksdgyrveee....sgslvlgWkdrpLvsvSaW 373
                    +  g+ei+n+vaceg+er erhe + kWr+++ e+ G++ v +s+++++q + l+++++ + yrv ++       l+l W d+pL++vSaW
  C.cajan_01772 547 M-YGKEIRNIVACEGRERLERHEGFDKWRRMMvEQGGLRCVGVSDREMSQSEFLVKMYACQSYRVTKQekegATGLTLSWLDQPLYTVSAW 636
                    *.9**************************99934589**********************889***955344456788************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.658241613IPR005202Transcription factor GRAS
PfamPF035146.8E-125267636IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRSE ASAQFQACHF QMNTQRLDLP CTTTFPRKDT SSRSQPLRPV  60
GLSVEKPLES KTSTCSLKHN IRLPPLATTA APTPLGAERE SIKDKSLKRL AEHEESFHIS  120
KRIKKGSTTT ECGDNFWFQP GLESNATTLG GLNTSLPFSS EEERVCFVPS EVVSHSSPLP  180
LNPWLESCVT KITNFGEGSQ HPPPPPHHHH PREGSVSNAS SESQGLSLRV NDNVSEHEVG  240
NGSGNPYHQH QEVVETGEEE DHHGFELVSL LTGCVDAIVS RNVSAINHFI GKLGDLASPK  300
GSSISRICAY FTEALAIRVT RVWPHVFHIS TTSRDMVDEE ENGTALRLLN QVTPIPKFLH  360
FTSNEMLLRA FEGKDRVHII DFDIKQGLQW PSLFQSLASR TNPPSHVRIT GIGESKQELN  420
ETGDRLSGFA EALNLPFEFH PVVDRLEDVR LWMLHVKENE TVAVNCVLQL HKTLYDGSGG  480
ALRDFLGLIR STNPSVVVMA EQEAEHNEAR LEARVCNSLK YYSAVFDCIE ESGVGEESAV  540
RAKVEEMYGK EIRNIVACEG RERLERHEGF DKWRRMMVEQ GGLRCVGVSD REMSQSEFLV  600
KMYACQSYRV TKQEKEGATG LTLSWLDQPL YTVSAWVPVH VHVALAAGTS SSFSQPPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6825863810380Protein SCARECROW
5b3h_A2e-682586389379Protein SCARECROW
5b3h_D2e-682586389379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_01772
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020227667.10.0scarecrow-like protein 28
RefseqXP_020227668.10.0scarecrow-like protein 28
RefseqXP_020227669.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A151SLD30.0A0A151SLD3_CAJCA; Scarecrow-like protein 28
STRINGXP_007155560.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein