PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_01740 | ||||||||
Common Name | KK1_001783 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | bHLH | ||||||||
Protein Properties | Length: 556aa MW: 61559.9 Da PI: 7.2719 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.8 | 6.8e-07 | 369 | 402 | 17 | 55 |
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 N++f Lr+l+P +K++Ka+iL ++eY+k+L+ C.cajan_01740 369 NHRFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 402 8999*********8.....8*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 8.9E-59 | 9 | 191 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 10.232 | 352 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-6 | 362 | 407 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-11 | 369 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.51E-8 | 369 | 406 | No hit | No description |
SuperFamily | SSF47459 | 3.79E-11 | 369 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-4 | 369 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 556 aa Download sequence Send to blast |
MAAPLGNRLQ SMLQAAVQSV HWTYSLFWQL CPQQVILVWG DGYYNGAIKT RKTVQPMEVS 60 AEEASLQRSQ QLRELYESLS AGETNPPTRR PCAALSPEDL TESEWFYLMC VSFTFPPGVG 120 LPGKAYARRQ HVWLTGANEA DSKTFSRAIL AKSARIQTVV CIPLLDGVVE LGTTDKVQED 180 LSFVQHVKSF FIDHNSPLPP KPALSEHSTS NPTSSSDHIP AVIELMQLEM PEDIRVGSPN 240 DGSNNLDSDF HLLAVTLVPL EELSQEDTHY SQTVSNILQS QSSRWPRSPP SVGYNTFSTH 300 SAFAKWTTRA THHFHPAVDG TNQWLLKYIL FTVPYLHAKS PADSSPQGAA AADPKLRGKG 360 TPQDELSANH RFIILRSLVP FVTKMDKASI LGDTIEYVKQ LRRKIQELEA RNRQTEAERS 420 KLPEVTVQRT SSSSSKEQQK SGVTVMDKRK VRIVEGAAAK AKAVDVAAAT TSVQVSIIES 480 DALLELECPH REGLLLDVMQ MLREVRIEVT GVQSSLNNGV FVAELRAKVK ENANGKKVSI 540 VEVKRALNQI IPHIVD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 4e-24 | 9 | 191 | 9 | 192 | Transcription factor MYC3 |
4rqw_B | 4e-24 | 9 | 191 | 9 | 192 | Transcription factor MYC3 |
4rs9_A | 4e-24 | 9 | 191 | 9 | 192 | Transcription factor MYC3 |
4yz6_A | 4e-24 | 9 | 191 | 9 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_01740 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027365438.1 | 0.0 | basic helix-loop-helix protein A-like isoform X1 | ||||
Swissprot | E3SXU4 | 0.0 | BHLHW_PEA; Basic helix-loop-helix protein A | ||||
TrEMBL | A0A151SL54 | 0.0 | A0A151SL54_CAJCA; Transcription factor TT8 | ||||
STRING | GLYMA02G16670.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3637 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 1e-164 | bHLH family protein |
Publications ? help Back to Top | |||
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