PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_01722

Common Name

Dof4

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

Dof

Protein Properties

Length: 392aa MW: 42643.7 Da PI: 8.3146

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_01722	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.7e-39	50	110	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCyynny+++qPryfCkaC+ryWt+GG++rnvPvG+grrk k+ss C.cajan_01722 50 PDKVLPCPRCNSMDTKFCYYNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKTKNSS 110 78999****************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	47	107	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-32	51	108	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.509	54	108	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	56	92	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
NAEEAKDSGT SLEAIVNLET PSTEEEAAKS KGEKPEKEES DADEKTLKKP DKVLPCPRCN 60 SMDTKFCYYN NYNINQPRYF CKACQRYWTA GGTMRNVPVG AGRRKTKNSS SHYRHITISE 120 ALQAARIDAS NGTYIPTLKS NGGVLSFGLD APICDSMASV LNLGDKKPLN GTRNGFENQR 180 LSLTCKSGEK GDGSSTSTMG ESNKSTFQQQ PVLQNHGLLT QLPCIPGVPW PHAWNSPLPS 240 PALCPSGLPL PFYPATFWNP GMPGNWNVPW FPPHSPASNP NSPNSGPNSP TLGKHSREGD 300 MIKQDSLQKE ETSKPRNGSV LVPKTLRIDD PSDAAKSSIW ETLGIKNESV SGGSMFKAFQ 360 PKKDEKNHVE ASPVLMANPA ALSRSLNFHE NS

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

NAEEAKDSGT SLEAIVNLET PSTEEEAAKS KGEKPEKEES DADEKTLKKP DKVLPCPRCN  60
SMDTKFCYYN NYNINQPRYF CKACQRYWTA GGTMRNVPVG AGRRKTKNSS SHYRHITISE  120
ALQAARIDAS NGTYIPTLKS NGGVLSFGLD APICDSMASV LNLGDKKPLN GTRNGFENQR  180
LSLTCKSGEK GDGSSTSTMG ESNKSTFQQQ PVLQNHGLLT QLPCIPGVPW PHAWNSPLPS  240
PALCPSGLPL PFYPATFWNP GMPGNWNVPW FPPHSPASNP NSPNSGPNSP TLGKHSREGD  300
MIKQDSLQKE ETSKPRNGSV LVPKTLRIDD PSDAAKSSIW ETLGIKNESV SGGSMFKAFQ  360
PKKDEKNHVE ASPVLMANPA ALSRSLNFHE NS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_01722

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235246	1e-179	AC235246.1 Glycine max strain Williams 82 clone GM_WBb0033G13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020228951.1	0.0	cyclic dof factor 3 isoform X1
Refseq	XP_020228952.1	0.0	cyclic dof factor 3 isoform X2
Swissprot	Q8LFV3	1e-110	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A0K8K5T6	0.0	A0A0K8K5T6_CAJCA; Dof protein
TrEMBL	A0A151SL83	0.0	A0A151SL83_CAJCA; Dof zinc finger protein DOF3.3 (Fragment)
STRING	GLYMA17G10920.3	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-104	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Malviya N, et al. Genome wide in silico characterization of Dof gene families of pigeonpea (Cajanus cajan (L) Millsp.). Mol. Biol. Rep., 2015. 42(2): p. 535-52 [PMID:25344821] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]