PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_01177 | ||||||||
Common Name | KK1_001209 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 434aa MW: 50265.5 Da PI: 7.5435 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00066 | 192 | 214 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C +rk++L+rH+r++ C.cajan_01177 192 YFCEFCLNFMKRKEQLQRHMRKC 214 78*******************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54160 | 3.57E-23 | 42 | 159 | IPR016197 | Chromo domain-like |
Gene3D | G3DSA:2.30.30.270 | 8.4E-37 | 44 | 118 | No hit | No description |
Pfam | PF11717 | 1.7E-20 | 48 | 106 | IPR025995 | RNA binding activity-knot of a chromodomain |
CDD | cd00024 | 1.23E-6 | 62 | 107 | No hit | No description |
SMART | SM00298 | 1.5E-6 | 62 | 121 | IPR000953 | Chromo/chromo shadow domain |
Gene3D | G3DSA:2.30.30.270 | 8.4E-37 | 153 | 203 | No hit | No description |
PROSITE profile | PS51726 | 75.584 | 158 | 429 | IPR002717 | Histone acetyltransferase domain, MYST-type |
SuperFamily | SSF55729 | 2.05E-111 | 159 | 430 | IPR016181 | Acyl-CoA N-acyltransferase |
Gene3D | G3DSA:3.40.630.30 | 4.1E-73 | 217 | 360 | IPR016181 | Acyl-CoA N-acyltransferase |
Pfam | PF01853 | 3.0E-84 | 219 | 396 | IPR002717 | Histone acetyltransferase domain, MYST-type |
CDD | cd04301 | 0.00194 | 270 | 328 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010224 | Biological Process | response to UV-B | ||||
GO:0016573 | Biological Process | histone acetylation | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043995 | Molecular Function | histone acetyltransferase activity (H4-K5 specific) |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 434 aa Download sequence Send to blast |
MGSLETPTAA ENGSAHPAGN GKSPSITAVE APPEPDVSKR RRSSVLPLEV GTRVMCRWRD 60 NKYHPVKVIE RRKVPNAIPN DYEYYVHYTE FNRRLDEWVK LEQLDLDSVE AVVDEKVEEK 120 GATGLKMTRH QKRKIDETHV EGHEELDAAS LREHEEFTKV KNIATIELGR YEIETWYFSP 180 FPPEYNDCLK LYFCEFCLNF MKRKEQLQRH MRKCDLKHPP GDEIYRSGTL SMFEVDGKKN 240 KVYGQNLCYL AKLFLDHKTL YYDVDLFLFY VLCECDDRGC HMVGYFSKEK HSEESYNLAC 300 ILTLPPYQRK GYGKFLIAFS YELSKKEGKV GTPERPLSDL GLLSYRGYWT RVLLDILKKH 360 KGNISIKELS DMTAIKAEDI LTTLQSLELI QYRKGQHVIC ADPKVLDRHL KAAGRGGLEV 420 DVSKLIWTPY KEQS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4dnc_A | 1e-118 | 154 | 433 | 1 | 282 | Histone acetyltransferase KAT8 |
4dnc_B | 1e-118 | 154 | 433 | 1 | 282 | Histone acetyltransferase KAT8 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Histone acetyltransferase which may be involved in transcriptional activation. Acetylates 'Lys-5' of histone H4 (H4K5ac) (PubMed:17877703, PubMed:19040736, PubMed:22170978, PubMed:23273925). Essential for gametophyte development (PubMed:19040736). Involved in DNA repair after UV-B exposure (PubMed:22170978). Negative regulator of flowering controlling the H4K5ac levels in the FLC chromatin (PubMed:23273925). {ECO:0000269|PubMed:17877703, ECO:0000269|PubMed:19040736, ECO:0000269|PubMed:22170978, ECO:0000269|PubMed:23273925}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_01177 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated upon UV-B exposure. {ECO:0000269|PubMed:22170978}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT142075 | 0.0 | BT142075.1 Lotus japonicus clone JCVI-FLLj-11A9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_029129210.1 | 0.0 | histone acetyltransferase of the MYST family 1 | ||||
Refseq | XP_029129211.1 | 0.0 | histone acetyltransferase of the MYST family 1 | ||||
Swissprot | Q9FLF7 | 0.0 | MYST1_ARATH; Histone acetyltransferase of the MYST family 1 | ||||
TrEMBL | A0A151SJR1 | 0.0 | A0A151SJR1_CAJCA; Histone acetyltransferase | ||||
STRING | GLYMA06G47380.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7066 | 10 | 11 |