PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_01041
Common NameKK1_001069
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HSF
Protein Properties Length: 404aa    MW: 45615.5 Da    PI: 6.2384
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_01041genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.33.3e-35161062101
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl k+y++++d+++++++sws+++nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF++++F k++k+ll++i
  C.cajan_01041  16 FLLKTYDMVDDSSTNDIVSWSSTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPER---------WEFANDEFVKDQKHLLKNI 102
                    9****************************************************************999.........******************* PP

                    XXXX CS
   HSF_DNA-bind  98 krkk 101
                    +r+k
  C.cajan_01041 103 HRRK 106
                    **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.99E-3612105IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.0E-3712105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-6012105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.9E-3116105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDGAPPSAAA GGPAPFLLKT YDMVDDSSTN DIVSWSSTNN SFVVWNPPEF ARLLLPTYFK  60
HNNFSSFIRQ LNTYGFRKIH PERWEFANDE FVKDQKHLLK NIHRRKPIHS HSHPPGSLVD  120
PERAAFEEEI EKLSREKTSL ESNIYSFKQH HSTAKHQLED FLLRLDGVEK RQKHLLNFFE  180
KALQNPAFIE HLSRKIESMD LSAYNKKRRL PQVDPVQPVA ESSFVDNTGA SFTFKMDSCL  240
SRRETTAESS KLHSLEPSSE EGDSHISCQL NLTLASCPLQ VNRNSYSARS PQIDCQEIGK  300
LAESNFFANG KESDSGVSSN RNATAEATNL ASSQEAPSNN QVNPAPPGRV NDVFWEQFLT  360
ERPGCSDNEE AISNYRANPY DEQDEGRSVH GISKNIKNMD QLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-22510515129Heat shock factor protein 1
5d5v_B3e-22510515129Heat shock factor protein 1
5d5v_D3e-22510515129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_01041
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976510.0BT097651.1 Soybean clone JCVI-FLGm-26G4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027342485.10.0heat stress transcription factor A-5-like isoform X2
SwissprotQ94BZ51e-129HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A151SJA30.0A0A151SJA3_CAJCA; Heat stress transcription factor A-5
STRINGXP_004504369.11e-179(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-131HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]