PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_00802
Common NameKK1_000825
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ARF
Protein Properties Length: 684aa    MW: 76020.6 Da    PI: 6.7755
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_00802genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.8e-23112212198
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f+k+lt sd++++g +++ +k+a+e+       +   + +++l  +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +vF   + + 
  C.cajan_00802 112 FCKILTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQELAAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFL--RGEH 203
                    99****************************9543..445569************************************************..4499 PP

                    E..EEEEE- CS
             B3  90 felvvkvfr 98 
                    ++l+v+v+r
  C.cajan_00802 204 GKLRVGVRR 212
                    99*****98 PP
2Auxin_resp102.65e-34238317183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    a+ha+ t+++F v+Y+Pr+  s+F+v ++k+++a+++k+svGmRfkm+fe++ds+err+sGt+vgv d++   W+nS+WrsLk
  C.cajan_00802 238 ASHAVMTRTMFLVYYKPRT--SQFIVGLNKYLEAVNNKFSVGMRFKMRFEGDDSPERRFSGTIVGVGDVSA-GWSNSQWRSLK 317
                    689***************6..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-41101241IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-40104227IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-19110212No hitNo description
PfamPF023622.1E-21112212IPR003340B3 DNA binding domain
SMARTSM010193.8E-21112214IPR003340B3 DNA binding domain
PROSITE profilePS5086311.589112214IPR003340B3 DNA binding domain
PfamPF065073.9E-32238317IPR010525Auxin response factor
PfamPF023094.7E-5556600IPR033389AUX/IAA domain
SuperFamilySSF542771.03E-12560640No hitNo description
PROSITE profilePS5174526.302564645IPR000270PB1 domain
PfamPF023094.0E-6606647IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
GLKDDDLYRE LWKLCAGPLV DVPRTGDRVF YFPQGHMEQL QASTDQELNQ EIPHFNLPAK  60
IFCRVVNIQL LAEQDTDEVY ACIALLPESD QTEPTNPDPN VSETPKQKFH SFCKILTASD  120
TSTHGGFSVL RKHATECLPP LDMTQATPTQ ELAAKDLHGF EWKFKHIYRG QPRRHLLTTG  180
WSTFVASKRL VAGDAFVFLR GEHGKLRVGV RRLARQQSPM PSSVISSQSM HLGVLATASH  240
AVMTRTMFLV YYKPRTSQFI VGLNKYLEAV NNKFSVGMRF KMRFEGDDSP ERRFSGTIVG  300
VGDVSAGWSN SQWRSLKIQW DEPATIPRPD RVSCWEIEPF VASTTLNVTQ PAVKGKRSRP  360
NEVSSSAASG FWYHGSSQSH ELGQLGAAAV VEVQSKENQV TCSLRQKDVI NSNPINANSR  420
VRVEGVWPCS PHVNVSSKNF SDPNINNCVS ARSSISGYPN VPSRSSDGPT CEGGEDGKRS  480
ENSLDCWLFG VNLSNNCSNV VISPSERGGS LSIVGSGPKE SIPAAACETE RVQTPNYSLS  540
NKQIISEASP NEWQNKQATV PSMRTRTKVQ MQGVAVGRAF DLTTLSGYDD LIDELEKLFD  600
IKGELRSQNK WAVTFTDDEN DMMLVGDDPW PEFCNMVKRI LICSREDLKK MKCCKLPASS  660
SEIEETLLSP DSQNRDETQQ SHMA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-171134013355Auxin response factor 1
4ldw_A1e-171134013355Auxin response factor 1
4ldw_B1e-171134013355Auxin response factor 1
4ldx_A1e-171134013355Auxin response factor 1
4ldx_B1e-171134013355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_00802
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029129168.10.0auxin response factor 18 isoform X3
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLA0A151SIK30.0A0A151SIK3_CAJCA; Auxin response factor (Fragment)
STRINGGLYMA16G02650.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]