PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_00530
Common NameKK1_000548
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 347aa    MW: 38958.7 Da    PI: 7.8349
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_00530genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05188205320
                    ETTTTEEESSHHHHHHHH CS
        zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
                    C+ C+ksF+r  nL+ H+
  C.cajan_00530 188 CSVCSKSFNRYNNLQMHM 205
                    *****************9 PP
2zf-C2H215.26.4e-05270292123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C +C+k F  k + ++H +++
  C.cajan_00530 270 YRCRKCDKAFAVKGDWRTHEKNC 292
                    9******************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.32E-6179208No hitNo description
Gene3DG3DSA:3.30.160.607.2E-5186205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.8E-5186205IPR007087Zinc finger, C2H2
SMARTSM003550.44186208IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.699186213IPR007087Zinc finger, C2H2
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
SuperFamilySSF576671.65E-6254290No hitNo description
Gene3DG3DSA:3.30.160.601.6E-5266290IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035531270290IPR015880Zinc finger, C2H2-like
SMARTSM00355200296319IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090502Biological ProcessRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0003676Molecular Functionnucleic acid binding
GO:0004526Molecular Functionribonuclease P activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MTDPQSNLYA GTFNFMPLYS HHSSFTSQSN LFSSYPLGNL NNTDTFSIQS ETSSSCAAPP  60
NSPPRREALP LINNISLTQK KENNEPSNSG GEVEEEGQKK RDKDESLLTS TNKDVDDETV  120
TVALRIGPPS MDHASDLMGS RKISTCAEMG EKGEVSEISG HPLDRLNKVQ YWIPTPSQIL  180
IGPTQFLCSV CSKSFNRYNN LQMHMWGHGS QYRKGPDSLK GTQPSAMLRL PCFCCAPGCK  240
HNIDHPRARP LKDFRTLQTH YKRKHGVKPY RCRKCDKAFA VKGDWRTHEK NCGKIWYCLC  300
GSDFKHKRSL KDHIKAFGHG HGAIDIDCMQ EDEAASEIDE HDRDSSM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_00530
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-175AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020227931.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-112ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A151SI030.0A0A151SI03_CAJCA; Protein TRANSPARENT TESTA 1
STRINGXP_007148861.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-114C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]