PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_00424
Common NameKK1_000439
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HD-ZIP
Protein Properties Length: 837aa    MW: 92256.7 Da    PI: 6.4632
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_00424genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-181674357
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  C.cajan_00424 16 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74
                   5679*****************************************************97 PP
2START178.44.1e-561603682205
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                    +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++l +
  C.cajan_00424 160 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGTIELLY 254
                    7899******************************************************.8888888888****************9999******* PP

                    EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
          START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                    ++l+a+++l+p Rdf+ +Ry+  l++g++vi+++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s
  C.cajan_00424 255 MQLYAPTTLAPaRDFWLLRYTSVLEDGSLVICERSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYES 350
                    ******************************************9988899*********************************************** PP

                    HHHHHHHHHHHHTXXXXX CS
          START 188 glaegaktwvatlqrqce 205
                    +++ ++kt++ +l+++++
  C.cajan_00424 351 STVLAQKTTMVALRQLRQ 368
                    ***********9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4021175IPR001356Homeobox domain
SMARTSM003891.2E-151379IPR001356Homeobox domain
SuperFamilySSF466896.42E-171479IPR009057Homeodomain-like
CDDcd000861.31E-161676No hitNo description
PfamPF000465.8E-161774IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-181874IPR009057Homeodomain-like
CDDcd146861.27E-668107No hitNo description
PROSITE profilePS5084825.241150365IPR002913START domain
CDDcd088759.62E-80154369No hitNo description
Gene3DG3DSA:3.30.530.202.4E-23157365IPR023393START-like domain
SMARTSM002348.9E-41159369IPR002913START domain
SuperFamilySSF559618.52E-38159348No hitNo description
PfamPF018521.5E-53160368IPR002913START domain
PfamPF086701.2E-51694836IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MAMSCKDGKH GLDNGKYVRY TPEQVEALER LYHDCPKPSS IRRQQLIREC PILSNIEPKQ  60
IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSQLV YENGYFRQHT  120
QNTALPTKDT SCESAVTSGQ RSLTTQHPPR DASPAGLMSI AEETLAEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIVAISHG CTGVAARACG LVGLEPTRVA EILKDRPSWF RDCRAVDVLN  240
VLPTANGGTI ELLYMQLYAP TTLAPARDFW LLRYTSVLED GSLVICERSL KNTQNGPSMP  300
PVQHFVRAEM LPSGYLIRPC EGGGSIIHIV DHMDLEPWSV PEVLRPLYES STVLAQKTTM  360
VALRQLRQIS HEVSQSNVTG WGRRPAALRA LGQRLSRGFN EAINGFTDEG WSMIGNDGVD  420
DVTVLVNSAP DKLMGLNLSF ANGFPAVSNA VLCAKASMLL QNVPPAILLR FLREHRSEWA  480
DNNMDAYSAA AIKVGPCGLP GSRVGNYGGQ VILPLAHTIE HEEFLEVIKL EGIASSPEET  540
IMPREVFLLQ LCSGMDENAV GTCAELIFAP IDASFADDAP LLPSGFRIIP LDSGKEASNP  600
NRTLDLASAL DVGPTGNRAS NDYSGNSGCM RSVMTIAFEF AFESHMQEHV ASMARQYVRS  660
IISSVQRVAL ALSPSHLSSQ AGLRTPLGTP EAQTLARWIC NSYRCYLGVE LLKSNNEGNE  720
SLLKSLWHHS DAILCCTLKA LPVFTFANQA GLDMLETTLV ALQDITLEKI FDDHGRKILC  780
SEFPQIIQQG FACLQGGICL SSMGRPISYE RVVAWKVLNE DENAHCICFM FMNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_00424
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020226055.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A151SHL80.0A0A151SHL8_CAJCA; Homeobox-leucine zipper protein ATHB-15
STRINGXP_007150614.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]