PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_00352
Common NameKK1_000362
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HD-ZIP
Protein Properties Length: 751aa    MW: 84236.5 Da    PI: 6.711
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_00352genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-20100153356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k  ++t+eq++e+e+lF+++++p++++r++L+k+lgL+ rqVk+WFqNrR++ k
  C.cajan_00352 100 KFNRHTPEQIREMEALFKESPHPDENQRQQLSKQLGLSSRQVKFWFQNRRTQIK 153
                    3345799*******************************************9987 PP
2START219.61e-682694904206
                    HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
          START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                    ++a++el+k+a  +ep+W +s+    e++n+de++++fe +++        +ea+r+s vv+++l +lv+ +ld++ qW+e+++    ka+t++vi
  C.cajan_00352 269 NRATEELIKMANMGEPLWLRSVetsrEILNYDEYVKEFEVENScserpnTFIEASRESEVVFADLSRLVQCFLDVN-QWKEMFPclisKAATVDVI 363
                    57899*********************************988889********************************.******************* PP

                    CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
          START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                    ++g      ga+qlm+aelq+l+p+vp R+++fvR+++ql+a++w+i dvS+d  +++  ++ +v+++++pSg++ie+ksngh+kv+wveh+++++
  C.cajan_00352 364 CNGegsnrnGAVQLMFAELQMLTPMVPtREVYFVRCCKQLSAEKWAIIDVSIDKVEDNI-DAFLVKCRKRPSGCIIEDKSNGHCKVIWVEHIECQK 458
                    *********************************************************98.9*********************************** PP

                    SXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 175 rlphwllrslvksglaegaktwvatlqrqcek 206
                    +++h+l+r +v+sgla+ga++w+atlq qce+
  C.cajan_00352 459 SSIHALYRAIVNSGLAFGARHWMATLQVQCER 490
                    ******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-2183149IPR009057Homeodomain-like
SuperFamilySSF466891.59E-1992156IPR009057Homeodomain-like
PROSITE profilePS5007118.30195155IPR001356Homeobox domain
SMARTSM003892.1E-1896159IPR001356Homeobox domain
PfamPF000466.4E-1899153IPR001356Homeobox domain
CDDcd000863.74E-17103153No hitNo description
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
PROSITE profilePS5084835.507257493IPR002913START domain
SuperFamilySSF559614.03E-31259490No hitNo description
CDDcd088758.29E-106261489No hitNo description
SMARTSM002341.6E-69266490IPR002913START domain
PfamPF018522.4E-54269490IPR002913START domain
Gene3DG3DSA:3.30.530.205.3E-4320486IPR023393START-like domain
SuperFamilySSF559619.12E-13512713No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MAVNMSNKPP HTKDFFPSPA LSLSLAGIFR HAEAAAETSA MEVVGDELRR EGTVEFSSDN  60
SAPVRSRSEE DFDGEGVHEI EDNDKDDKDD DKRRKKKRKK FNRHTPEQIR EMEALFKESP  120
HPDENQRQQL SKQLGLSSRQ VKFWFQNRRT QIKTIQERHE NSLLKTELES LRAENKSMRE  180
TINNSSCPNC STVTANLHGS MSTEKHLLIE NAKLKIEVEK LRTALGKYSP RTTSPSSSAG  240
HDEEENRSSL DFYNGIFGLE KSRIMDTVNR ATEELIKMAN MGEPLWLRSV ETSREILNYD  300
EYVKEFEVEN SCSERPNTFI EASRESEVVF ADLSRLVQCF LDVNQWKEMF PCLISKAATV  360
DVICNGEGSN RNGAVQLMFA ELQMLTPMVP TREVYFVRCC KQLSAEKWAI IDVSIDKVED  420
NIDAFLVKCR KRPSGCIIED KSNGHCKVIW VEHIECQKSS IHALYRAIVN SGLAFGARHW  480
MATLQVQCER LVFYMATNVP MKDSTGVATM AGRKSILKLA QRMTWSFCHA VGASSFHTWT  540
KVTSKTGEDI RISSRKNLND PGEPLGVILS AVTSVWLPVS PNVLFDFLRD EAHRSKWDSK  600
SSGGSVKSIA NLAKGKDRGN VVNIQKIQSK GNSVWILQDS CTSAYESMVV YTPVDIAGIK  660
SVLTGCDSSN LTVLPSGFSI VPDGIEARPF VITSRQEEKY TEGGSLLTMA FQILANPSTT  720
TKLIVESVES ANNLISCTLK NIRTSLQCED D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19199KRRKKKRKK
29297RRKKKR
39298RRKKKRK
49399RKKKRKK
59599KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_00352
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311640.0KT031164.1 Glycine max clone HN_CCL_123 homeodomain/HOMEOBOX transcription factor (Glyma07g02220.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020227921.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A151SHE80.0A0A151SHE8_CAJCA; Homeobox-leucine zipper protein GLABRA 2
STRINGGLYMA07G02220.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]