PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_00315
Common NameKK1_000324
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HB-other
Protein Properties Length: 269aa    MW: 30677.5 Da    PI: 5.2354
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_00315genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.61.4e-051470751
                   --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHH CS
       Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNr 51
                   +++++  eLe+ ++   ++ +++   +e+Ak+           +L+ +qV+ WF Nr
  C.cajan_00315 14 LSSDEMLELENIYKDmgEKPLDRMLCQEIAKNFssssngasktSLSWQQVQQWFRNR 70
                   678889999****9666999999999*****999999999999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF167194.4E-39110237IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006306Biological ProcessDNA methylation
GO:0006346Biological Processmethylation-dependent chromatin silencing
GO:0031047Biological Processgene silencing by RNA
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MNKLGLTESP FPTLSSDEML ELENIYKDMG EKPLDRMLCQ EIAKNFSSSS NGASKTSLSW  60
QQVQQWFRNR QRVTQVKDSS SPCLLSPDHS HSFLLGSGDG NSSSSKDLSE LAFEARSTKD  120
VAWHDVAMFL NYRVLSTGEL EARVRYAGFG KEQDEWMNVR EGVRERSVPL EPSECHKVKD  180
GHLVLCFLER EDYALYCDAR VVKVQRKIHD PEDCTCTFIV RFVHDNTEEG VSWKRLCCRP  240
TQEEPAVYTN PALNFTLNPT LNPIESLWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iup_A6e-531092422135SAWADEE HOMEODOMAIN HOMOLOG 1
4iup_B6e-531092422135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_A5e-531092422135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B5e-531092422135SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A5e-531092422135SHH1 SAWADEE
4iur_B5e-531092422135SHH1 SAWADEE
4iut_A5e-531092422135SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B5e-531092422135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A5e-531092422135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B5e-531092422135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A5e-531092422135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B5e-531092422135SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_00315
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020227511.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 1 isoform X1
RefseqXP_029129365.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 1 isoform X1
TrEMBLA0A151SH360.0A0A151SH36_CAJCA; Uncharacterized protein
STRINGGLYMA07G01880.31e-142(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27041415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.18e-45sequence-specific DNA binding transcription factors;sequence-specific DNA binding