PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa37329s010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 54aa MW: 6128.91 Da PI: 10.1189

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa37329s010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.5	2.8e-17	12	54	1	47
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47 + ++GVr++ +g+WvAeIr+p + r r +lg+f taeeAa a++ Csa37329s010.1 12 CSFRGVRQRI-WGKWVAEIREP---N-RgNRLWLGTFPTAEEAASAYD 54 579**998.******8...2.359***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	9.4E-12	12	54	IPR001471	AP2/ERF domain
CDD	cd00018	2.58E-21	12	54	No hit	No description
PROSITE profile	PS51032	19.506	13	54	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.4E-24	13	54	IPR001471	AP2/ERF domain
SMART	SM00380	3.5E-16	13	54	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.47E-16	13	54	IPR016177	DNA-binding domain
PRINTS	PR00367	1.3E-10	14	25	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-10	36	52	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 54 aa Download sequence Send to blast
MKGKGGPENP HCSFRGVRQR IWGKWVAEIR EPNRGNRLWL GTFPTAEEAA SAYD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269\|PubMed:12609047}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa37329s010.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high-salt and drought stresses. {ECO:0000269\|PubMed:12609047}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB007791	2e-49	AB007791.1 Arabidopsis thaliana mRNA for DREB2B, complete cds.
GenBank	AB016571	2e-49	AB016571.1 Arabidopsis thaliana DREB2B gene, complete cds.
GenBank	AK117363	2e-49	AK117363.1 Arabidopsis thaliana At3g11020 mRNA for putative DREB2B transcription factor, complete cds, clone: RAFL16-93-F04.
GenBank	ATAC009991	2e-49	AC009991.5 Arabidopsis thaliana chromosome III BAC F9F8 genomic sequence, complete sequence.
GenBank	BT008351	2e-49	BT008351.1 Arabidopsis thaliana At3g11020 mRNA, complete cds.
GenBank	CP002686	2e-49	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBank	KC412253	2e-49	KC412253.1 Arabidopsis thaliana DRE/CRT-binding protein 2B (DREB2B) mRNA, DREB2B-AT3G11020 allele, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010486724.1	1e-33	PREDICTED: dehydration-responsive element-binding protein 2B-like isoform X1
Refseq	XP_010486726.1	1e-33	PREDICTED: dehydration-responsive element-binding protein 2B-like isoform X1
Refseq	XP_019096690.1	5e-34	PREDICTED: dehydration-responsive element-binding protein 2B-like
Swissprot	A2WL19	3e-26	DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
Swissprot	Q0JQF7	3e-26	DRE2A_ORYSJ; Dehydration-responsive element-binding protein 2A
TrEMBL	R0G5H1	4e-30	R0G5H1_9BRAS; Uncharacterized protein
STRING	XP_010486727.1	3e-32	(Camelina sativa)
STRING	XP_010486732.1	4e-32	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05410.2	3e-28	DRE-binding protein 2A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sun SJ, et al. Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice. J. Exp. Bot., 2010. 61(10): p. 2807-18 [PMID:20460361] Mallikarjuna G,Mallikarjuna K,Reddy MK,Kaul T Expression of OsDREB2A transcription factor confers enhanced dehydration and salt stress tolerance in rice (Oryza sativa L.). Biotechnol. Lett., 2011. 33(8): p. 1689-97 [PMID:21528404] Cui M, et al. Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice. Plant Physiol. Biochem., 2011. 49(12): p. 1384-91 [PMID:22078375] Yang A,Dai X,Zhang WH A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice. J. Exp. Bot., 2012. 63(7): p. 2541-56 [PMID:22301384] Li X, et al. LcSAIN1, a novel salt-induced gene from sheepgrass, confers salt stress tolerance in transgenic Arabidopsis and rice. Plant Cell Physiol., 2013. 54(7): p. 1172-85 [PMID:23695503] Schmidt R, et al. Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice. Plant Cell, 2013. 25(6): p. 2115-31 [PMID:23800963] Huang YC,Huang WL,Hong CY,Lur HS,Chang MC Comprehensive analysis of differentially expressed rice actin depolymerizing factor gene family and heterologous overexpression of OsADF3 confers Arabidopsis Thaliana drought tolerance. Rice (N Y), 2012. 5(1): p. 33 [PMID:24279948] Zhang XX, et al. OsDREB2A, a rice transcription factor, significantly affects salt tolerance in transgenic soybean. PLoS ONE, 2013. 8(12): p. e83011 [PMID:24376625] Wang ST, et al. MicroRNA319 positively regulates cold tolerance by targeting OsPCF6 and OsTCP21 in rice (Oryza sativa L.). PLoS ONE, 2014. 9(3): p. e91357 [PMID:24667308] Ma T, et al. LcWRKY5: an unknown function gene from sheepgrass improves drought tolerance in transgenic Arabidopsis. Plant Cell Rep., 2014. 33(9): p. 1507-18 [PMID:24913125] Zhao J, et al. Global transcriptional profiling of a cold-tolerant rice variety under moderate cold stress reveals different cold stress response mechanisms. Physiol Plant, 2015. 154(3): p. 381-94 [PMID:25263631] Chen M,Zhao Y,Zhuo C,Lu S,Guo Z Overexpression of a NF-YC transcription factor from bermudagrass confers tolerance to drought and salinity in transgenic rice. Plant Biotechnol. J., 2015. 13(4): p. 482-91 [PMID:25283804] Gao Y, et al. A maize phytochrome-interacting factor 3 improves drought and salt stress tolerance in rice. Plant Mol. Biol., 2015. 87(4-5): p. 413-28 [PMID:25636202] Cai W, et al. Overexpression of Rat Neurons Nitric Oxide Synthase in Rice Enhances Drought and Salt Tolerance. PLoS ONE, 2015. 10(6): p. e0131599 [PMID:26121399] Sakuraba Y, et al. Rice ONAC106 Inhibits Leaf Senescence and Increases Salt Tolerance and Tiller Angle. Plant Cell Physiol., 2015. 56(12): p. 2325-39 [PMID:26443376] Sato H, et al. The Arabidopsis transcriptional regulator DPB3-1 enhances heat stress tolerance without growth retardation in rice. Plant Biotechnol. J., 2016. 14(8): p. 1756-67 [PMID:26841113] Yu Y, et al. Transgenic rice expressing a cassava (Manihot esculenta Crantz) plasma membrane gene MePMP3-2 exhibits enhanced tolerance to salt and drought stresses. Genet. Mol. Res., 2016. [PMID:26909954]