PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa36937s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GRAS | ||||||||
Protein Properties | Length: 67aa MW: 7084.03 Da PI: 9.5273 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 81.4 | 1.6e-25 | 1 | 66 | 99 | 162 |
GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetg 162 N aI eav++e+ vHiiDf+isqG+QW++L++aL +Rp+gpp++RiTg+++p+s+ ++ le +g Csa36937s010.1 1 NGAIAEAVKNESFVHIIDFQISQGGQWVSLIRALGARPGGPPKVRITGIDDPRSSfaRQGGLELVG 66 89*************************************************998877777777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 5.4E-23 | 1 | 66 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 20.468 | 1 | 67 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 67 aa Download sequence Send to blast |
NGAIAEAVKN ESFVHIIDFQ ISQGGQWVSL IRALGARPGG PPKVRITGID DPRSSFARQG 60 GLELVGQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa36937s010.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC012561 | 5e-72 | AC012561.2 Arabidopsis thaliana chromosome I BAC F11F12 genomic sequence, complete sequence. | |||
GenBank | AC079279 | 5e-72 | AC079279.4 Arabidopsis thaliana chromosome 1 BAC F17J6 genomic sequence, complete sequence. | |||
GenBank | AF036302 | 5e-72 | AF036302.1 Arabidopsis thaliana scarecrow-like 5 (SCL5) mRNA, partial cds. | |||
GenBank | AY034929 | 5e-72 | AY034929.1 Arabidopsis thaliana putative scarecrow protein (At1g50600) mRNA, partial cds. | |||
GenBank | AY039611 | 5e-72 | AY039611.1 Arabidopsis thaliana F17J6.12/F17J6.12 mRNA, complete cds. | |||
GenBank | BT000883 | 5e-72 | BT000883.1 Arabidopsis thaliana clone C105359 putative scarecrow protein (At1g50600) mRNA, complete cds. | |||
GenBank | CP002684 | 5e-72 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010481091.1 | 2e-41 | PREDICTED: scarecrow-like protein 5 | ||||
Refseq | XP_010500634.1 | 3e-41 | PREDICTED: scarecrow-like protein 5 | ||||
Swissprot | Q8H125 | 3e-41 | SCL5_ARATH; Scarecrow-like protein 5 | ||||
TrEMBL | A0A078GCM1 | 5e-40 | A0A078GCM1_BRANA; BnaA06g02700D protein | ||||
TrEMBL | D7KGQ4 | 6e-40 | D7KGQ4_ARALL; Uncharacterized protein | ||||
TrEMBL | M4EBB8 | 2e-40 | M4EBB8_BRARP; Uncharacterized protein | ||||
STRING | Bra026077.1-P | 4e-41 | (Brassica rapa) | ||||
STRING | fgenesh2_kg.1__4145__AT1G50600.1 | 9e-41 | (Arabidopsis lyrata) | ||||
STRING | XP_010461911.1 | 1e-40 | (Camelina sativa) | ||||
STRING | XP_010481091.1 | 8e-41 | (Camelina sativa) | ||||
STRING | XP_010500634.1 | 1e-40 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50600.1 | 1e-43 | scarecrow-like 5 |
Publications ? help Back to Top | |||
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