PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa34589s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 69aa    MW: 7795.62 Da    PI: 4.5068
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa34589s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-192169253
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53
                     y+GVr ++ +g+++AeIrd    + k  r++lg+f+taeeAa a+++a+ +l
  Csa34589s010.1 21 SYRGVRKRP-WGKYAAEIRDsT--R-KGIRVWLGTFDTAEEAALAYDQAAFAL 69
                    69*******.**********32..2.24*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.57E-212069No hitNo description
PROSITE profilePS5103220.6262169IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-192168IPR016177DNA-binding domain
PfamPF008475.6E-142168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-262169IPR001471AP2/ERF domain
SMARTSM003801.1E-202169IPR001471AP2/ERF domain
PRINTSPR003677.6E-122233IPR001471AP2/ERF domain
PRINTSPR003677.6E-124561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
SSIIKDEEEA TIAAEEEEEK SYRGVRKRPW GKYAAEIRDS TRKGIRVWLG TFDTAEEAAL  60
AYDQAAFAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-2318691162Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa34589s010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2280854e-57AK228085.1 Arabidopsis thaliana mRNA for putative ethylene response factor, complete cds, clone: RAFL14-57-B14.
GenBankBT0110014e-57BT011001.1 Arabidopsis thaliana At1g06160 gene, complete cds.
GenBankBT0149584e-57BT014958.1 Arabidopsis thaliana At1g06160 gene, complete cds.
GenBankCP0026844e-57CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF9P144e-57AC025290.3 Sequence of BAC F9P14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485642.19e-42PREDICTED: ethylene-responsive transcription factor ERF094-like
RefseqXP_010485653.19e-42PREDICTED: ethylene-responsive transcription factor ERF094-like
SwissprotA0A3Q7I5Y93e-28ERFC3_SOLLC; Ethylene-response factor C3
SwissprotQ8VYM06e-28ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A1J3I7946e-36A0A1J3I794_NOCCA; Uncharacterized protein
STRINGXP_010485642.13e-41(Camelina sativa)
STRINGXP_010485653.13e-41(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06160.13e-21octadecanoid-responsive Arabidopsis AP2/ERF 59
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]
  5. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]