PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa34414s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 52aa MW: 6067.02 Da PI: 4.367 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 58.8 | 1.9e-18 | 7 | 52 | 1 | 47 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL 47 lppGfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++Pw+L Csa34414s010.1 7 LPPGFRFHPTDEELVMHYLCRKCASQSIAV-PIIAEIDLYKYDPWEL 52 79*************************999.88************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.01E-19 | 4 | 52 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.451 | 7 | 52 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-8 | 8 | 50 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 52 aa Download sequence Send to blast |
MSAELELPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW EL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-24 | 3 | 52 | 11 | 60 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa34414s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF370617 | 3e-51 | AF370617.1 Arabidopsis thaliana OsNAC6 protein-like protein (T1N6.12) mRNA, complete cds. | |||
GenBank | AK226385 | 3e-51 | AK226385.1 Arabidopsis thaliana mRNA for hypothetical protein with NAC domain protein, complete cds, clone: RAFL05-19-I05. | |||
GenBank | AY050799 | 3e-51 | AY050799.1 Arabidopsis thaliana At1g01720 mRNA sequence. | |||
GenBank | AY086063 | 3e-51 | AY086063.1 Arabidopsis thaliana clone 20909 mRNA, complete sequence. | |||
GenBank | BT024513 | 3e-51 | BT024513.1 Arabidopsis thaliana At1g01720 mRNA, complete cds. | |||
GenBank | CP002684 | 3e-51 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | T1N6 | 3e-51 | AC009273.2 Sequence of BAC T1N6 from Arabidopsis thaliana chromosome 1, complete sequence. | |||
GenBank | X74755 | 3e-51 | X74755.1 A.thaliana ATAF1 mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010479865.1 | 1e-30 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 4e-29 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A2I4HBT5 | 3e-28 | A0A2I4HBT5_JUGRE; NAC domain-containing protein 2-like | ||||
TrEMBL | F6KVS9 | 4e-28 | F6KVS9_9ROSI; Nam-like protein | ||||
STRING | XP_010479865.1 | 4e-30 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7967 | 13 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 2e-31 | NAC family protein |