PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa34102s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 70aa MW: 8170.12 Da PI: 4.5704 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.8 | 3.4e-10 | 19 | 64 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+eE +++ +a + + ++ +W ++a++++ g+t +++ ++ Csa34102s010.1 19 KWTAEENKKFENALAFYDKDtpdRWVKVAAMLP-GKTVGDVIKQYRE 64 8********************************.*******999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-6 | 13 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.544 | 15 | 70 | IPR017884 | SANT domain |
SMART | SM00717 | 1.9E-10 | 16 | 68 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.72E-13 | 18 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-8 | 19 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.32E-7 | 19 | 65 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 70 aa Download sequence Send to blast |
PATYLETSNW LFQENRGTKW TAEENKKFEN ALAFYDKDTP DRWVKVAAML PGKTVGDVIK 60 QYRELEEDVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 9e-14 | 17 | 69 | 8 | 60 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa34102s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC003028 | 8e-71 | AC003028.3 Arabidopsis thaliana chromosome 2 clone F16M14 map ve018, complete sequence. | |||
GenBank | AK118135 | 8e-71 | AK118135.1 Arabidopsis thaliana At2g38090 mRNA for putative MYB family transcription factor, complete cds, clone: RAFL19-43-J04. | |||
GenBank | AY519529 | 8e-71 | AY519529.1 Arabidopsis thaliana MYB transcription factor (At2g38090) mRNA, complete cds. | |||
GenBank | BT006122 | 8e-71 | BT006122.1 Arabidopsis thaliana clone U50930 putative MYB family transcription factor (At2g38090) mRNA, complete cds. | |||
GenBank | CP002685 | 8e-71 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010517093.1 | 6e-44 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 4e-21 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | V4MIQ7 | 2e-42 | V4MIQ7_EUTSA; Uncharacterized protein | ||||
STRING | XP_010517093.1 | 2e-43 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 4e-46 | MYB family protein |
Publications ? help Back to Top | |||
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