PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa30087s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 76aa MW: 8967.34 Da PI: 10.8516 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.7 | 4.9e-14 | 18 | 64 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI ++q Csa30087s010.1 18 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLADAITYITDMQ 64 799***********************66......***************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-18 | 13 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.234 | 14 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.62E-10 | 17 | 68 | No hit | No description |
Pfam | PF00010 | 1.3E-11 | 18 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.7E-18 | 18 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-14 | 20 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
KPRKRGRKPA NGREEALNHV EAERQRREKL NQRFYALRAV VPNISKMDKA SLLADAITYI 60 TDMQKKIRVY ETEQQI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-29 | 12 | 74 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 3e-29 | 12 | 74 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 3e-29 | 12 | 74 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 3e-29 | 12 | 74 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 3e-29 | 12 | 74 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 3e-29 | 12 | 74 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 3e-29 | 12 | 74 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 3e-29 | 12 | 74 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa30087s010.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF251688 | 3e-95 | AF251688.1 Arabidopsis thaliana putative transcription factor BHLH3 (BHLH3) mRNA, complete cds. | |||
GenBank | AL161544 | 3e-95 | AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44. | |||
GenBank | AY057626 | 3e-95 | AY057626.1 Arabidopsis thaliana AT4g16430/dl4240w mRNA, complete cds. | |||
GenBank | BT002301 | 3e-95 | BT002301.1 Arabidopsis thaliana At4g16430/dl4240w mRNA, complete cds. | |||
GenBank | CP002687 | 3e-95 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | Z97341 | 3e-95 | Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010451453.2 | 8e-48 | PREDICTED: transcription factor bHLH3-like | ||||
Swissprot | O23487 | 2e-43 | BH003_ARATH; Transcription factor bHLH3 | ||||
TrEMBL | A0A087G9I9 | 2e-41 | A0A087G9I9_ARAAL; Uncharacterized protein | ||||
TrEMBL | A0A2N9GI02 | 1e-41 | A0A2N9GI02_FAGSY; Uncharacterized protein | ||||
TrEMBL | D7M9V3 | 3e-41 | D7M9V3_ARALL; Basic helix-loop-helix family protein | ||||
STRING | XP_010451453.1 | 2e-46 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6611 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16430.1 | 9e-46 | bHLH family protein |
Publications ? help Back to Top | |||
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