PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa22754s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 53aa MW: 6528.46 Da PI: 10.6219 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.4 | 5.9e-09 | 1 | 18 | 39 | 56 |
S-HHHHHHHHHHHHHHHH CS Homeobox 39 LterqVkvWFqNrRakek 56 ++ rq+ +WFqNrRa++k Csa22754s010.1 1 MQPRQIAIWFQNRRARWK 18 5789*************9 PP | |||||||
2 | HD-ZIP_I/II | 75.1 | 1.3e-24 | 1 | 51 | 38 | 88 |
HD-ZIP_I/II 38 lqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +qprq+a+WFqnrRAR+kt+qlE+dy++Lk+++++lk++n++L + +++L Csa22754s010.1 1 MQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFESLKSDNDSLLAYNKKLL 51 79*******************************************999997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00046 | 2.7E-6 | 1 | 18 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.67E-8 | 1 | 30 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.91E-4 | 1 | 21 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-9 | 1 | 28 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.673 | 1 | 20 | IPR001356 | Homeobox domain |
Pfam | PF02183 | 8.8E-12 | 20 | 53 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 53 aa Download sequence Send to blast |
MQPRQIAIWF QNRRARWKTR QLERDYDSLK KQFESLKSDN DSLLAYNKKL LAE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa22754s010.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:12644682}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK228890 | 3e-76 | AK228890.1 Arabidopsis thaliana mRNA for putative homeobox-leucine zipper protein, complete cds, clone: RAFL16-20-K05. | |||
GenBank | ATAC008261 | 3e-76 | AC008261.5 Arabidopsis thaliana chromosome III BAC T4P13 genomic sequence, complete sequence. | |||
GenBank | AY087631 | 3e-76 | AY087631.1 Arabidopsis thaliana clone 3722 mRNA, complete sequence. | |||
GenBank | BT029221 | 3e-76 | BT029221.1 Arabidopsis thaliana At3g01220 mRNA, complete cds. | |||
GenBank | CP002686 | 3e-76 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002884288.1 | 5e-30 | homeobox-leucine zipper protein ATHB-20 | ||||
Refseq | XP_010463554.1 | 7e-30 | PREDICTED: homeobox-leucine zipper protein ATHB-20 isoform X1 | ||||
Refseq | XP_010463555.1 | 7e-30 | PREDICTED: homeobox-leucine zipper protein ATHB-20 isoform X2 | ||||
Refseq | XP_010463556.1 | 4e-30 | PREDICTED: homeobox-leucine zipper protein ATHB-20 isoform X3 | ||||
Refseq | XP_010485524.1 | 7e-30 | PREDICTED: homeobox-leucine zipper protein ATHB-20-like | ||||
Refseq | XP_010516613.1 | 7e-30 | PREDICTED: homeobox-leucine zipper protein ATHB-20-like isoform X1 | ||||
Refseq | XP_019099239.1 | 4e-30 | PREDICTED: homeobox-leucine zipper protein ATHB-20-like isoform X2 | ||||
Refseq | XP_023642332.1 | 5e-30 | homeobox-leucine zipper protein ATHB-20 | ||||
Swissprot | Q8LAT0 | 7e-30 | ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20 | ||||
TrEMBL | A0A178VB41 | 1e-28 | A0A178VB41_ARATH; HB20 | ||||
TrEMBL | D7LAH8 | 1e-28 | D7LAH8_ARALL; ATHB20 | ||||
STRING | scaffold_300109.1 | 2e-29 | (Arabidopsis lyrata) | ||||
STRING | Bostr.1460s0094.1.p | 2e-29 | (Boechera stricta) | ||||
STRING | XP_010463555.1 | 3e-29 | (Camelina sativa) | ||||
STRING | XP_010485524.1 | 3e-29 | (Camelina sativa) | ||||
STRING | XP_010516613.1 | 3e-29 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G01220.1 | 3e-32 | homeobox protein 20 |