PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa22437s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 67aa MW: 7397.45 Da PI: 8.4377 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.8 | 7.3e-10 | 2 | 28 | 30 | 56 |
AP2 30 rfslgkfgtaeeAakaaiaarkklege 56 r++lg+++tae Aa a+++a+ kl+ge Csa22437s010.1 2 RVWLGTYDTAEAAAYAYDRAAYKLRGE 28 79***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 14.144 | 1 | 35 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-16 | 2 | 36 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-6 | 2 | 28 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-12 | 2 | 36 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.2E-6 | 2 | 41 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 67 aa Download sequence Send to blast |
MRVWLGTYDT AEAAAYAYDR AAYKLRGEYA RLNFPNLKDP SELLGLGDSS KLIALKNAVD 60 GKIQSIC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa22437s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC066689 | 4e-94 | AC066689.5 Arabidopsis thaliana chromosome 1 BAC F15H21 genomic sequence, complete sequence. | |||
GenBank | AK228763 | 4e-94 | AK228763.1 Arabidopsis thaliana mRNA for AP2-containing DNA-binding protein, complete cds, clone: RAFL16-09-E15. | |||
GenBank | AY560876 | 4e-94 | AY560876.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g64380) mRNA, complete cds. | |||
GenBank | BT033082 | 4e-94 | BT033082.1 Arabidopsis thaliana unknown protein (At1g64380) mRNA, complete cds. | |||
GenBank | CP002684 | 4e-94 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010473699.1 | 2e-41 | PREDICTED: ethylene-responsive transcription factor ERF061-like | ||||
Refseq | XP_019093428.1 | 1e-41 | PREDICTED: ethylene-responsive transcription factor ERF061-like | ||||
Swissprot | Q9C7W2 | 2e-41 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | D7KSA8 | 6e-40 | D7KSA8_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.2__42__AT1G64380.1 | 1e-40 | (Arabidopsis lyrata) | ||||
STRING | XP_010418502.1 | 1e-40 | (Camelina sativa) | ||||
STRING | XP_010430572.1 | 1e-40 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4174 | 25 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64380.1 | 3e-28 | ERF family protein |
Publications ? help Back to Top | |||
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