PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g081690.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 273aa MW: 30785.6 Da PI: 4.5615

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g081690.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.4	1.2e-20	130	180	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+++g r++lg+f+ta +Aa+a+++a+ +l+g Csa20g081690.1 130 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFDTAIQAARAYDEAAFRLRG 180 8******.******96655..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	3.2E-33	129	189	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.7E-22	130	190	IPR016177	DNA-binding domain
CDD	cd00018	3.62E-31	130	188	No hit	No description
PROSITE profile	PS51032	24.381	130	188	IPR001471	AP2/ERF domain
SMART	SM00380	1.3E-36	130	194	IPR001471	AP2/ERF domain
Pfam	PF00847	9.7E-15	130	180	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.5E-13	131	142	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.5E-13	170	190	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MATPNEVSAL WFIEKHLLDE ISPVAKHEPA ASESSSDSSS MFFPECKPEE IIDLDTPRFF 60 DFIFDFDSPQ VSVSDFDFKP SDQTQLEPEQ IRKPPLKISL PAKTEWFQFV AEDPKPEVTE 120 PEVTEEEKKH YRGVRQRPWG KFAAEIRDPN KRGSRVWLGT FDTAIQAARA YDEAAFRLRG 180 SKAILNFPLE VGKWKLPRAA DEAEKKRKRD DNVIEETTVV EKAMKTEQGV DGDGGETFPL 240 CSDLDLTGFL NFPLLSPLSP HSSFGFSQLT VV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-30	129	191	4	66	ATERF1
3gcc_A	1e-30	129	191	4	66	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:9756931}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g081690.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010494954.1	0.0	PREDICTED: ethylene-responsive transcription factor 5-like
Swissprot	O80341	1e-130	EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBL	A0A178UKK9	1e-128	A0A178UKK9_ARATH; ERF5
STRING	XP_010494954.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47230.1	1e-104	ethylene responsive element binding factor 5

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]