PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g081680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 320aa    MW: 35958.4 Da    PI: 5.7224
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g081680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19200250255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  Csa20g081680.1 200 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAFRMRG 250
                     8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.35E-32199258No hitNo description
Gene3DG3DSA:3.30.730.102.3E-32199258IPR001471AP2/ERF domain
PROSITE profilePS5103224.276200258IPR001471AP2/ERF domain
SMARTSM003806.8E-41200264IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-23200260IPR016177DNA-binding domain
PfamPF008478.5E-14200250IPR001471AP2/ERF domain
PRINTSPR003677.0E-11201212IPR001471AP2/ERF domain
PRINTSPR003677.0E-11224240IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MKNEQGRGST YFMIHGLLPC YRPLFCESTG TGTGHVVFAD ELVTTSFFEV WSSFLRYYEI  60
KREEDSPVRC WHRRCDKFTD VFDAADSPSH ADCNIESDYD LLEMVRCHLL GGENELRLNE  120
SIPSSCLSES WGDLPLKEND SEDMLVYGLL KDAFHFDTSS SDLSCLYDFP AVKVEPTEVL  180
ATEKPKKAVK VAAEAPKGKH YRGVRQRPWG KFAAEIRDPA KNGARVWLGT FETAEDAALA  240
YDRAAFRMRG SRALLNFPLR VNSGEPDPVR ITSKRSSSSS SSSNSSENGK MKRRRKAEYL  300
TSEVKCEAGE ETRVDELLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-43197265270ATERF1
3gcc_A2e-43197265270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g081680.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0081041e-174AB008104.1 Arabidopsis thaliana AtERF-2 mRNA for ethylene responsive element binding factor 2, complete cds.
GenBankAB0181171e-174AB018117.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQL5.
GenBankAK1751511e-174AK175151.1 Arabidopsis thaliana mRNA for ethylene responsive element binding factor 2 (ATERF2), complete cds, clone: RAFL21-57-E18.
GenBankAK1752291e-174AK175229.1 Arabidopsis thaliana mRNA for ethylene responsive element binding factor 2, complete cds, clone: RAFL21-65-J18.
GenBankAK1765321e-174AK176532.1 Arabidopsis thaliana mRNA for ethylene responsive element binding factor 2 (ATERF2), complete cds, clone: RAFL25-05-B19.
GenBankAK1766061e-174AK176606.1 Arabidopsis thaliana mRNA for ethylene responsive element binding factor 2 (ATERF2), complete cds, clone: RAFL25-13-E16.
GenBankAK1768251e-174AK176825.1 Arabidopsis thaliana mRNA for ethylene responsive element binding factor 2 (ATERF2), complete cds, clone: RAFL25-38-F08.
GenBankBT0244701e-174BT024470.1 Arabidopsis thaliana At5g47220 mRNA, complete cds.
GenBankCP0026881e-174CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494952.11e-165PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotO803381e-128EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBLA0A178UCP31e-126A0A178UCP3_ARATH; ERF2
STRINGXP_010494952.11e-164(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.11e-101ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]