PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g081520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GATA | ||||||||
Protein Properties | Length: 478aa MW: 53377.1 Da PI: 6.8365 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.1 | 3.7e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Csa20g081520.1 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.7E-11 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.55E-12 | 5 | 46 | No hit | No description |
CDD | cd00202 | 1.84E-17 | 6 | 63 | No hit | No description |
Pfam | PF00320 | 6.0E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.2 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.5E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 2.9E-8 | 238 | 328 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHS RAEGDEIEID 60 DRRGHQRVMI KGMSLNKKIP KRKSYQENFT VKRANLEFST GFKRKALDED ASNRSSSGSV 120 VSNSESCAQS NAWETTFPCK RRTGVGRPKA ASSVEKLTKD LYTILQEQQS SCLSGSSECD 180 LLFENETPML LGHGSVLMRD PHSSGAREEE SEASSFLVES SKSSSVHSAK FGGKAIKQEQ 240 LKRSKSQVLG RHSLLLCSID LKDVFNFDEF IEKFTEEEQK KLMKLLPQVD SVDRPDSLRS 300 MFESSQFKEN FSLFQQLVAD GVFETSSLSG SKLEDMKTLA KLALSDPNKS HLLESYYMLK 360 EQRKEIEDSV TTPSRVSNLS PSNNNSLVTI ERPCESLNQN FSETRVVMRS PKEVMKIRSN 420 HIKTEEILEN SVSSFNPMSC GGSLVFSYED NDISDQDLLL DVPSNGSFPQ AELLHMI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g081520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT020259 | 0.0 | BT020259.1 Arabidopsis thaliana At5g47140 gene, complete cds. | |||
GenBank | BT020450 | 0.0 | BT020450.1 Arabidopsis thaliana At5g47140 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010494936.1 | 0.0 | PREDICTED: GATA transcription factor 27 isoform X1 | ||||
Swissprot | Q5PP38 | 0.0 | GAT27_ARATH; GATA transcription factor 27 | ||||
TrEMBL | D7MPX3 | 0.0 | D7MPX3_ARALL; Zinc finger family protein | ||||
STRING | XP_010494936.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1606 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47140.1 | 0.0 | GATA transcription factor 27 |