PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g081120.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HD-ZIP

Protein Properties

Length: 826aa MW: 91721.7 Da PI: 5.2633

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g081120.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.8	1.2e-20	111	166	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF++n++p+ ++r++L+++lgL+ rqVk+WFqNrR+++k Csa20g081120.2 111 KKRYHRHTNRQIQEMEALFKENPHPDDKQRKRLSAELGLKPRQVKFWFQNRRTQMK 166 688999***********************************************998 PP
2	START	146.5	2.5e-46	321	554	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS...........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS START 1 elaeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv..........dsgealrasgvvdmvlallveellddkeqWdetla 77 e+a ++ qel k+ +aeep+W k +n++e+++ f+ + ea++a vv+m++ +lv +l+ +W+e++ Csa20g081120.2 321 EIAVSCVQELTKMCDAEEPLWIKKKsdkisgeiLCLNEEEYMRLFP---WpvenhnnkadFAREASKANSVVIMNSITLVDAFLNAD-KWSEMFC 411 578899*************9999777776554456666666664...033556699999**********************.**9 PP ....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE..-TTS--..-TTSEE-EESSEEEEEEEEC CS START 78 ....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvd..seqkppe.sssvvRaellpSgiliepks 158 +a+t++ issg g l lm+ae+q+lsplvp R+ +f+Ry +q + g w+ivd +d ++q++p + s ++ pSg++i++++ Csa20g081120.2 412 sivaRAKTVQIISSGvsgasGSLLLMYAEFQVLSPLVPtREAYFLRYVEQnAENGNWAIVDFPIDsfHDQMQPPsTNSPHEYKRKPSGCIIQDMP 506 9999******************************************99*****99883334444444666667779******* PP TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ng+s+v wvehv+++++++h+ + vksg+a+ga++w+ lqrqce+ Csa20g081120.2 507 NGYSQVKWVEHVEVDEKHVHETFAEYVKSGMAFGANRWLDVLQRQCER 554 ********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.6E-20	100	169	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-21	105	175	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.589	108	168	IPR001356	Homeobox domain
SMART	SM00389	1.4E-18	109	172	IPR001356	Homeobox domain
CDD	cd00086	3.88E-19	111	169	No hit	No description
Pfam	PF00046	3.5E-18	111	166	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	143	166	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.887	312	557	IPR002913	START domain
SuperFamily	SSF55961	1.03E-30	314	556	No hit	No description
CDD	cd08875	3.18E-107	316	553	No hit	No description
SMART	SM00234	2.6E-26	321	554	IPR002913	START domain
Pfam	PF01852	9.6E-39	322	554	IPR002913	START domain
SuperFamily	SSF55961	7.42E-15	595	801	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 826 aa Download sequence Send to blast
MLSIGEGNVM TSDNMRFASQ QPSSSSPGTI QNPNFNFIPF NSFSSIIPKE EHGMMSMMMM 60 MGDGTVEEMM ENGSAGGSFG SGSEQAEDPK FGNESDVNEL QDDEQPPPAK KKRYHRHTNR 120 QIQEMEALFK ENPHPDDKQR KRLSAELGLK PRQVKFWFQN RRTQMKAQQD RTENAMLRAE 180 NANLKSENCH LQGELRCLSC PSCGGPTVLG DIPFNELHIE NCRLREELDR ICCITSRYTG 240 RPMQSMPSSQ PLIDPSSTLP HHQPSLELDM SVYAGNFPEH SCADMMMLPS QDTTCFFPDQ 300 TVNNNNNNML LAEEEKVIAM EIAVSCVQEL TKMCDAEEPL WIKKKSDKIS GEILCLNEEE 360 YMRLFPWPVE NHNNKADFAR EASKANSVVI MNSITLVDAF LNADKWSEMF CSIVARAKTV 420 QIISSGVSGA SGSLLLMYAE FQVLSPLVPT REAYFLRYVE QNAENGNWAI VDFPIDSFHD 480 QMQPPSTNSP HEYKRKPSGC IIQDMPNGYS QVKWVEHVEV DEKHVHETFA EYVKSGMAFG 540 ANRWLDVLQR QCERIASLMA RNITDLGVIS SAEARRNMMR LSQRMVRTFC VNISTAYGQS 600 WTALSETSKD TVRITTRKMC EPGQPTGVLL SAVSTTWLPF THHQVFDLIR DQHHQSLLEV 660 LFNGNSPHEV AHIANGSHPG NCISLLRINV ASNSWHNVEL MLQESSIDNS GSLIVYSTVD 720 VDSIQLAMNG EDSSNIPILP LGFSIVPVNP PEGISVNSNS PPSCLLTVAI QVLASNVPTA 780 KPNLSTVTTI NNHLCATVNQ ITSALTSSVT PAIASSAAVS KQEAS*

Sequence ? help Back to Top

Protein Sequence Length: 826 aa Download sequence Send to blast

MLSIGEGNVM TSDNMRFASQ QPSSSSPGTI QNPNFNFIPF NSFSSIIPKE EHGMMSMMMM  60
MGDGTVEEMM ENGSAGGSFG SGSEQAEDPK FGNESDVNEL QDDEQPPPAK KKRYHRHTNR  120
QIQEMEALFK ENPHPDDKQR KRLSAELGLK PRQVKFWFQN RRTQMKAQQD RTENAMLRAE  180
NANLKSENCH LQGELRCLSC PSCGGPTVLG DIPFNELHIE NCRLREELDR ICCITSRYTG  240
RPMQSMPSSQ PLIDPSSTLP HHQPSLELDM SVYAGNFPEH SCADMMMLPS QDTTCFFPDQ  300
TVNNNNNNML LAEEEKVIAM EIAVSCVQEL TKMCDAEEPL WIKKKSDKIS GEILCLNEEE  360
YMRLFPWPVE NHNNKADFAR EASKANSVVI MNSITLVDAF LNADKWSEMF CSIVARAKTV  420
QIISSGVSGA SGSLLLMYAE FQVLSPLVPT REAYFLRYVE QNAENGNWAI VDFPIDSFHD  480
QMQPPSTNSP HEYKRKPSGC IIQDMPNGYS QVKWVEHVEV DEKHVHETFA EYVKSGMAFG  540
ANRWLDVLQR QCERIASLMA RNITDLGVIS SAEARRNMMR LSQRMVRTFC VNISTAYGQS  600
WTALSETSKD TVRITTRKMC EPGQPTGVLL SAVSTTWLPF THHQVFDLIR DQHHQSLLEV  660
LFNGNSPHEV AHIANGSHPG NCISLLRINV ASNSWHNVEL MLQESSIDNS GSLIVYSTVD  720
VDSIQLAMNG EDSSNIPILP LGFSIVPVNP PEGISVNSNS PPSCLLTVAI QVLASNVPTA  780
KPNLSTVTTI NNHLCATVNQ ITSALTSSVT PAIASSAAVS KQEAS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	141	DKQRKR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g081120.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB013394	0.0	AB013394.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD22.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010494885.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5-like isoform X1
Refseq	XP_010494886.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5-like isoform X2
Refseq	XP_010494890.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5-like isoform X3
Refseq	XP_010494891.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5-like isoform X4
Swissprot	Q9FJS2	0.0	HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBL	R0GUB6	0.0	R0GUB6_9BRAS; Uncharacterized protein
STRING	XP_010494886.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lung SC, et al. Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621]