PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g080920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 608aa MW: 66331.2 Da PI: 4.9856 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 433 | 478 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L Csa20g080920.1 433 NHVEAERQRREKLNQRFYSLRAVVPNV-----SKMDKASLLGDAISYINEL 478 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.0E-55 | 59 | 242 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.282 | 429 | 478 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.51E-18 | 432 | 496 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.40E-14 | 432 | 483 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.0E-17 | 433 | 497 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.0E-10 | 433 | 478 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.8E-17 | 435 | 484 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence Send to blast |
MNGGTTSSIN FLTTGDDDAS AAAMEAFIGT NQHSSLFPPP QPQPQPQSLL PPQFNEDTLQ 60 QRLQALIESA GENWTYAIFW QISHDFDSST GDNTVILGWG DGYYKGEEDK EKKKNNTNTA 120 EQEHRKRVIR ELNSLISGGI GVSDEANDEE VTDTEWFFLV SMTQSFPNGV GLPGESFLNS 180 RVIWLSGSGA LTGSGCERAG QGQIYGLKTM VCIAAQNGVV ELGSSEAISQ SSDLMDKVNS 240 LFNSNNGGNN GGEACSWGFN LNPDQGENDP ALWISEPATN TGIESPARVN NGNHSNSNSK 300 SDSHQISKLE KNDISSVENQ NRLGERELNF SSSGLNQNGN FQGGLKSNET LSFCGNNNES 360 NKKKRSPVSK GSNNDEGMLS FSTVVRSAAK SGDSDHSDLE ASVVKEAIVV EPPEKKPRKR 420 GRKPANGREE PLNHVEAERQ RREKLNQRFY SLRAVVPNVS KMDKASLLGD AISYINELKS 480 KLQQAEIDKE EIQKRLDGVN KEGKGGGGGG SRARERKCSN QDTSIEMEID VKIIGWDVMI 540 RVQCSKKDHP GARFMEALKE LDLEVNHASL SVVNDLMIQQ ATVKMGSQFF NHDQLKVALM 600 TKVGENY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rru_A | 1e-136 | 6 | 238 | 1 | 227 | Transcription factor MYC3 |
4ywc_A | 1e-136 | 6 | 238 | 1 | 227 | Transcription factor MYC3 |
4ywc_B | 1e-136 | 6 | 238 | 1 | 227 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 414 | 422 | KKPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tryptophan, jasmonic acid (JA) and other stress-responsive gene regulation. With MYC2 and MYC4, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters. {ECO:0000269|PubMed:12136026, ECO:0000269|PubMed:21242320, ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g080920.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Barely up-regulated by jasmonic acid. {ECO:0000269|PubMed:21242320, ECO:0000269|PubMed:21335373}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB016882 | 0.0 | AB016882.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZA15. | |||
GenBank | AF251690 | 0.0 | AF251690.1 Arabidopsis thaliana putative transcription factor BHLH5 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019097973.1 | 0.0 | PREDICTED: transcription factor MYC3-like | ||||
Swissprot | Q9FIP9 | 0.0 | MYC3_ARATH; Transcription factor MYC3 | ||||
TrEMBL | R0GNI5 | 0.0 | R0GNI5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010494857.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1265 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46760.1 | 0.0 | bHLH family protein |