PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g080840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 329aa    MW: 36595.4 Da    PI: 7.0409
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g080840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.14.3e-1587138155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++    + K + a+i+  A+++Ik+L+
  Csa20g080840.1  87 QRMTHIAVERNRRRQMNQHLSVLRSLMPQP---FAHKGDQASIVGGAIDFIKELE 138
                     79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.31E-1385141No hitNo description
Gene3DG3DSA:4.10.280.103.3E-1385140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-1585150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.69486137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-1287138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-992143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MTLEALSSNG LLNFLLSETL SPTPFKSLVD LEPLPGNDVI ISKNTIMDEI SHQEPPPPRP  60
PPATNRGKKR RRRKPRVCKN EEEAENQRMT HIAVERNRRR QMNQHLSVLR SLMPQPFAHK  120
GDQASIVGGA IDFIKELEHK LLSLEAQKLH NAKLNQSVTT STSQDSNGEP ENPHQQSPLS  180
ISQFFLHSYD PSQESRNGST SSVKTALEDL EVTLIETHAN IRILSRRRGF RWSTMATARP  240
PQLSRLVAAL QSLSLSVLHL SVTTMDTYAI YSISAKVEES CQLSSVDDIA GAVHHMLSII  300
EEEPICCSSM SELPFDFSLN HTNATHSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16773KKRRRRK
26774KKRRRRKP
36873KRRRRK
46975RRRRKPR
58798RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g080840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2216130.0AK221613.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL07-91-M02.
GenBankBT0256630.0BT025663.1 Arabidopsis thaliana At5g46690 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494850.10.0PREDICTED: transcription factor bHLH71
SwissprotQ56XR00.0BH071_ARATH; Transcription factor bHLH71
TrEMBLC0SVS70.0C0SVS7_ARATH; Uncharacterized protein At5g46690 (Fragment)
STRINGXP_010494850.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103892535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.10.0beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]