PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa20g075960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | BES1 | ||||||||
Protein Properties | Length: 684aa MW: 76902 Da PI: 5.8422 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 162.1 | 3.6e-50 | 80 | 228 | 2 | 145 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq. 95 g+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+V++AL+reAGw v++DGttyr++ +p+ ++++ ++s+es+l+ Csa20g075960.1 80 GKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVDADGTTYRQSHQPN----HVVQYPTRSIESPLSs 170 789************************************************************************....8999999999999998 PP DUF822 96 sslkssalaspvesysaspksssfpspssldsislasa........asllpvlsvlsl 145 s+lk++a+a+ +++++++ ++ +sp+slds+ +a++ + +p++sv +l Csa20g075960.1 171 STLKNCAKATLECQQHSVLRIDENLSPVSLDSVVIAENdhpgngryTGASPITSVGCL 228 99*********************************99988888877777777777776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 4.5E-48 | 80 | 226 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 2.77E-161 | 247 | 681 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 1.3E-169 | 250 | 680 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 7.9E-83 | 256 | 645 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.7E-55 | 286 | 300 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.7E-55 | 307 | 325 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.7E-55 | 329 | 350 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.7E-55 | 422 | 444 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.7E-55 | 495 | 514 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.7E-55 | 529 | 545 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.7E-55 | 546 | 557 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.7E-55 | 564 | 587 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.7E-55 | 602 | 624 | IPR001554 | Glycoside hydrolase, family 14 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 684 aa Download sequence Send to blast |
MHTLNNTTGS QDPNLDPIPS DPDQFPNRNH NHPQTRRPRG FAATAAAASI VPTESDVNNG 60 NIAGIGGGEG SSGGGGGERG KGKREREKEK ERTKLRERHR RAITSRMLAG LRQYGNFPLP 120 ARADMNDVIA ALAREAGWSV DADGTTYRQS HQPNHVVQYP TRSIESPLSS STLKNCAKAT 180 LECQQHSVLR IDENLSPVSL DSVVIAENDH PGNGRYTGAS PITSVGCLEA NQLIQDVHST 240 EPRNDFTESF YVPVYAMLPV GIIDNFGQLV DPDGVRQELS YMKSLNVDGV VIDCWWGIVE 300 GWNPQKYVWS GYRELFNLIR DFKLKLQVVM AFHEYGGNVS GNVIISLPQW VLEIGKDNPD 360 IFFTDREGRR SFECLNWSID KERVLHGRTG IEVYFDFMRS FRSEFDDFFV EGLIAAVEIG 420 LGASGELKYP SFPERMGWIY PGIGEFQCYD KYSQLNLQKE AKSRGFAFWG KGPENAGQYN 480 SQPHETGFFQ ERGEYDSYYG RFFLNWYSQL LIGHAENVLS LANLAFEETK IIVKIPAIYW 540 SYKTSSHAAE LTAGYYNPSN RDGYSPLFET LKKYSVTLKF VCPGPQMSPN EHEEALADPE 600 GLSWQVINAA WDKQLLIGGE NAITCFDREG CMRLTDIAKP RNHPDSYHFS FFTYRQPSPL 660 VQGSTCFPDL DYFIKRMHGD IQR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wdq_A | 1e-121 | 251 | 680 | 11 | 444 | Beta-amylase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00543 | DAP | Transfer from AT5G45300 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa20g075960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK117140 | 0.0 | AK117140.1 Arabidopsis thaliana At5g45300 mRNA for putative beta-amylase, complete cds, clone: RAFL16-68-D16. | |||
GenBank | BT006482 | 0.0 | BT006482.1 Arabidopsis thaliana At5g45300 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010494622.1 | 0.0 | PREDICTED: beta-amylase 8 | ||||
Swissprot | Q9FH80 | 0.0 | BAM8_ARATH; Beta-amylase 8 | ||||
TrEMBL | D7MUR1 | 0.0 | D7MUR1_ARALL; Beta-amylase | ||||
STRING | XP_010494622.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10888 | 28 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G45300.1 | 0.0 | beta-amylase 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|