PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g075960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family BES1
Protein Properties Length: 684aa    MW: 76902 Da    PI: 5.8422
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g075960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822162.13.6e-50802282145
          DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq. 95 
                     g+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+V++AL+reAGw v++DGttyr++ +p+    ++++  ++s+es+l+ 
  Csa20g075960.1  80 GKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVDADGTTYRQSHQPN----HVVQYPTRSIESPLSs 170
                     789************************************************************************....8999999999999998 PP

          DUF822  96 sslkssalaspvesysaspksssfpspssldsislasa........asllpvlsvlsl 145
                     s+lk++a+a+   +++++++ ++ +sp+slds+ +a++        +  +p++sv +l
  Csa20g075960.1 171 STLKNCAKATLECQQHSVLRIDENLSPVSLDSVVIAENdhpgngryTGASPITSVGCL 228
                     99*********************************99988888877777777777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.5E-4880226IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.77E-161247681IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.3E-169250680IPR013781Glycoside hydrolase, catalytic domain
PfamPF013737.9E-83256645IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.7E-55286300IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.7E-55307325IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.7E-55329350IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.7E-55422444IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.7E-55495514IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.7E-55529545IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.7E-55546557IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.7E-55564587IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.7E-55602624IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MHTLNNTTGS QDPNLDPIPS DPDQFPNRNH NHPQTRRPRG FAATAAAASI VPTESDVNNG  60
NIAGIGGGEG SSGGGGGERG KGKREREKEK ERTKLRERHR RAITSRMLAG LRQYGNFPLP  120
ARADMNDVIA ALAREAGWSV DADGTTYRQS HQPNHVVQYP TRSIESPLSS STLKNCAKAT  180
LECQQHSVLR IDENLSPVSL DSVVIAENDH PGNGRYTGAS PITSVGCLEA NQLIQDVHST  240
EPRNDFTESF YVPVYAMLPV GIIDNFGQLV DPDGVRQELS YMKSLNVDGV VIDCWWGIVE  300
GWNPQKYVWS GYRELFNLIR DFKLKLQVVM AFHEYGGNVS GNVIISLPQW VLEIGKDNPD  360
IFFTDREGRR SFECLNWSID KERVLHGRTG IEVYFDFMRS FRSEFDDFFV EGLIAAVEIG  420
LGASGELKYP SFPERMGWIY PGIGEFQCYD KYSQLNLQKE AKSRGFAFWG KGPENAGQYN  480
SQPHETGFFQ ERGEYDSYYG RFFLNWYSQL LIGHAENVLS LANLAFEETK IIVKIPAIYW  540
SYKTSSHAAE LTAGYYNPSN RDGYSPLFET LKKYSVTLKF VCPGPQMSPN EHEEALADPE  600
GLSWQVINAA WDKQLLIGGE NAITCFDREG CMRLTDIAKP RNHPDSYHFS FFTYRQPSPL  660
VQGSTCFPDL DYFIKRMHGD IQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12125168011444Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g075960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171400.0AK117140.1 Arabidopsis thaliana At5g45300 mRNA for putative beta-amylase, complete cds, clone: RAFL16-68-D16.
GenBankBT0064820.0BT006482.1 Arabidopsis thaliana At5g45300 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494622.10.0PREDICTED: beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLD7MUR10.0D7MUR1_ARALL; Beta-amylase
STRINGXP_010494622.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108882832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]